CAZyme3D

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Entry ID

Information for CAZyme ID: QDF67269.1

Basic Information

GenBank IDQDF67269.1
FamilyAA10, CBM5
Sequence Length451
UniProt IDA0A4Y6IDF3(100,100)Download
Average pLDDT?80.52
CAZy50 ID76467
CAZy50 RepNo, WBJ94349.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2590015
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sp. SNU WT4

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLSASFHSQV  SAHGWVEFPA  ARQVICSQDG  GHWSNNGQDI  PNQACKAAYD  ISGTYPFVQI60
NEFAALTKDY  RDIEAVKRQV  PNGELCSAGA  SAKLGMSNPS  SEWQKTKIKL  DSNNQILLTF120
HASAPHNPSF  WEFYLTKPDY  DPSQALTWDD  LELVDTEGNV  AVSDDRKYRI  KVTLPADRKG180
DAILYTRWQR  DDPAGEGFYN  CSDINFSANG  TDGNGGDIVD  PEDPTFNELG  YYLPQGYPTP240
NVDDYVSFRG  FNNNGQEQLE  ERLLITANNQ  DNWPELLALK  VNDKHKNKWF  IGVWHAEMQH300
YMYDRQQPYA  NKVWNNDSKA  SYALSIVHAE  PPIDPPTPPQ  PGDNWNKDTT  YNDGDTAIHL360
GKHWQAHWWT  KGDEPGTTGE  WGVWREINGT  TPPLPPEPPV  PPVTGDEWKV  EATYSEGQQV420
THNQVLWQAH  WWTKGEEPGT  TGEWGVWRAV  K451

Predicted 3D structure by AlphaFold2 with pLDDT = 80.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA10(13-205)+CBM5(343-381)+CBM5(406-444)

MLSASFHSQV  SAHGWVEFPA  ARQVICSQDG  GHWSNNGQDI  PNQACKAAYD  ISGTYPFVQI60
NEFAALTKDY  RDIEAVKRQV  PNGELCSAGA  SAKLGMSNPS  SEWQKTKIKL  DSNNQILLTF120
HASAPHNPSF  WEFYLTKPDY  DPSQALTWDD  LELVDTEGNV  AVSDDRKYRI  KVTLPADRKG180
DAILYTRWQR  DDPAGEGFYN  CSDINFSANG  TDGNGGDIVD  PEDPTFNELG  YYLPQGYPTP240
NVDDYVSFRG  FNNNGQEQLE  ERLLITANNQ  DNWPELLALK  VNDKHKNKWF  IGVWHAEMQH300
YMYDRQQPYA  NKVWNNDSKA  SYALSIVHAE  PPIDPPTPPQ  PGDNWNKDTT  YNDGDTAIHL360
GKHWQAHWWT  KGDEPGTTGE  WGVWREINGT  TPPLPPEPPV  PPVTGDEWKV  EATYSEGQQV420
THNQVLWQAH  WWTKGEEPGT  TGEWGVWRAV  K451

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help