Information for CAZyme ID: QDF67269.1
Basic Information
GenBank ID | QDF67269.1 |
Family | AA10, CBM5 |
Sequence Length | 451 |
UniProt ID | A0A4Y6IDF3(100,100)![]() |
Average pLDDT? | 80.52 |
CAZy50 ID | 76467 |
CAZy50 Rep | No, WBJ94349.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2590015 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Alteromonadales |
Family | Shewanellaceae |
Genus | Shewanella |
Species | Shewanella sp. SNU WT4 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLSASFHSQV SAHGWVEFPA ARQVICSQDG GHWSNNGQDI PNQACKAAYD ISGTYPFVQI | 60 |
NEFAALTKDY RDIEAVKRQV PNGELCSAGA SAKLGMSNPS SEWQKTKIKL DSNNQILLTF | 120 |
HASAPHNPSF WEFYLTKPDY DPSQALTWDD LELVDTEGNV AVSDDRKYRI KVTLPADRKG | 180 |
DAILYTRWQR DDPAGEGFYN CSDINFSANG TDGNGGDIVD PEDPTFNELG YYLPQGYPTP | 240 |
NVDDYVSFRG FNNNGQEQLE ERLLITANNQ DNWPELLALK VNDKHKNKWF IGVWHAEMQH | 300 |
YMYDRQQPYA NKVWNNDSKA SYALSIVHAE PPIDPPTPPQ PGDNWNKDTT YNDGDTAIHL | 360 |
GKHWQAHWWT KGDEPGTTGE WGVWREINGT TPPLPPEPPV PPVTGDEWKV EATYSEGQQV | 420 |
THNQVLWQAH WWTKGEEPGT TGEWGVWRAV K | 451 |
Predicted 3D structure by AlphaFold2 with pLDDT = 80.52 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : AA10(13-205)+CBM5(343-381)+CBM5(406-444)
MLSASFHSQV SAHGWVEFPA ARQVICSQDG GHWSNNGQDI PNQACKAAYD ISGTYPFVQI | 60 |
NEFAALTKDY RDIEAVKRQV PNGELCSAGA SAKLGMSNPS SEWQKTKIKL DSNNQILLTF | 120 |
HASAPHNPSF WEFYLTKPDY DPSQALTWDD LELVDTEGNV AVSDDRKYRI KVTLPADRKG | 180 |
DAILYTRWQR DDPAGEGFYN CSDINFSANG TDGNGGDIVD PEDPTFNELG YYLPQGYPTP | 240 |
NVDDYVSFRG FNNNGQEQLE ERLLITANNQ DNWPELLALK VNDKHKNKWF IGVWHAEMQH | 300 |
YMYDRQQPYA NKVWNNDSKA SYALSIVHAE PPIDPPTPPQ PGDNWNKDTT YNDGDTAIHL | 360 |
GKHWQAHWWT KGDEPGTTGE WGVWREINGT TPPLPPEPPV PPVTGDEWKV EATYSEGQQV | 420 |
THNQVLWQAH WWTKGEEPGT TGEWGVWRAV K | 451 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.