Information for CAZyme ID: QDC65377.1
Basic Information
| GenBank ID | QDC65377.1 |
| Family | GT104 |
| Sequence Length | 370 |
| UniProt ID | A0A5B8CXB5(100,100) |
| Average pLDDT? | 93.99 |
| CAZy50 ID | 119163 |
| CAZy50 Rep | No, QDD08206.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2588536 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Nitrosomonadales |
| Family | Methylophilaceae |
| Genus | Candidatus Methylopumilus |
| Species | Candidatus Methylopumilus universalis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MCRIMSNKSL IACHLICKVI DFFGDIGVAW RIAKQLKVDF NIEVHLLVDD LMTSRRLIPS | 60 |
| LDISLKKQTV DGITIHHCDF SEDSKSLPPP PAFVFNLFNI DLPNAYKLLM QSEKSKYIAI | 120 |
| EYLSAEPWVE NFHLKPSIDP ESGLIKTFFY PGFTGQTGGL IREKDLLSRR ESFVQANRDK | 180 |
| FIKSFGGNPN LYSISLFYYP IQKIEAFLDV MELMKKPIQF FIPQYLFDLL KVKKNYQYLH | 240 |
| IISYPFLSHD DFDDLLRSCN LNFVRGEDSW IRAIWAGKPF IWQPYIQENS IHLIKLKAFL | 300 |
| KNYCGGCEQE LSEVLFKMHD DWSNNKFNEA LWRDFFKNQS SLESFALKRS HHYFKEPSFV | 360 |
| ESLVDYCSET | 370 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.99 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT104(12-369)
| MCRIMSNKSL IACHLICKVI DFFGDIGVAW RIAKQLKVDF NIEVHLLVDD LMTSRRLIPS | 60 |
| LDISLKKQTV DGITIHHCDF SEDSKSLPPP PAFVFNLFNI DLPNAYKLLM QSEKSKYIAI | 120 |
| EYLSAEPWVE NFHLKPSIDP ESGLIKTFFY PGFTGQTGGL IREKDLLSRR ESFVQANRDK | 180 |
| FIKSFGGNPN LYSISLFYYP IQKIEAFLDV MELMKKPIQF FIPQYLFDLL KVKKNYQYLH | 240 |
| IISYPFLSHD DFDDLLRSCN LNFVRGEDSW IRAIWAGKPF IWQPYIQENS IHLIKLKAFL | 300 |
| KNYCGGCEQE LSEVLFKMHD DWSNNKFNEA LWRDFFKNQS SLESFALKRS HHYFKEPSFV | 360 |
| ESLVDYCSET | 370 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.