CAZyme3D

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Entry ID

Information for CAZyme ID: QCQ49051.1

Basic Information

GenBank IDQCQ49051.1
FamilyGT51
Sequence Length640
UniProt IDA0A0I9S4K7(100,100)Download
Average pLDDT?87.55
CAZy50 ID38927
CAZy50 RepNo, QUT31102.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID817
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGKYRTKGSI  ALIITGSVLI  LVLTGLYWGR  NGILCRMVGK  RILRTEQKYG  LSIRYDALRM60
KGLNEIELSN  LSVVPDKRDT  LLTLHALNMR  LSFWKLLRGK  IEVRNVTADR  LKVSFIKADS120
TANYDFLFLK  KEQEVPAGSA  QADYAHRVNR  ILNLLYGFLP  ENGTLRQVDV  SERKDRNFVA180
IRIPQLSIRQ  NHFNSDIEVQ  EDSVRQHWTT  CGEVNRSHHT  LKAELYAQHK  EKIALPYLKR240
RFGADIRLDT  LTYSLTESEG  NSGQIILTGQ  AAVNGLEVYH  KALSPQTVNL  DRGQISYRVL300
VGKEFAELDS  TTLVQFNQMQ  LHPYLKAEKR  EHQWHFTAAL  NKSWFPANEL  FGSLPKGLFS360
NLEGIKTDGE  LSYHFLLDVD  FALPDSLKLE  SELKERNFRI  VKYGATDLGK  MSEEFIYTAY420
ENGQPVRTFP  IGPSWEHFTP  LDSISPLLQM  SVMQSEDGAF  YYHRGFLPDA  MREALIQDLK480
VKRFARGGST  ITMQLVKNVF  LNRNKNIARK  LEEALIVWLI  ETERLTSKDR  MYEVYLNIVE540
WGPLVYGAQE  AAAYYFKKRP  SQLTAEESIF  LASIIPKPKH  FRNSFTGDMK  LKENLEGYYR600
LIAERLAKKG  VISEAAADSI  RPEINVTGEA  RKDLERDSIQ  640

Predicted 3D structure by AlphaFold2 with pLDDT = 87.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(433-584)

MGKYRTKGSI  ALIITGSVLI  LVLTGLYWGR  NGILCRMVGK  RILRTEQKYG  LSIRYDALRM60
KGLNEIELSN  LSVVPDKRDT  LLTLHALNMR  LSFWKLLRGK  IEVRNVTADR  LKVSFIKADS120
TANYDFLFLK  KEQEVPAGSA  QADYAHRVNR  ILNLLYGFLP  ENGTLRQVDV  SERKDRNFVA180
IRIPQLSIRQ  NHFNSDIEVQ  EDSVRQHWTT  CGEVNRSHHT  LKAELYAQHK  EKIALPYLKR240
RFGADIRLDT  LTYSLTESEG  NSGQIILTGQ  AAVNGLEVYH  KALSPQTVNL  DRGQISYRVL300
VGKEFAELDS  TTLVQFNQMQ  LHPYLKAEKR  EHQWHFTAAL  NKSWFPANEL  FGSLPKGLFS360
NLEGIKTDGE  LSYHFLLDVD  FALPDSLKLE  SELKERNFRI  VKYGATDLGK  MSEEFIYTAY420
ENGQPVRTFP  IGPSWEHFTP  LDSISPLLQM  SVMQSEDGAF  YYHRGFLPDA  MREALIQDLK480
VKRFARGGST  ITMQLVKNVF  LNRNKNIARK  LEEALIVWLI  ETERLTSKDR  MYEVYLNIVE540
WGPLVYGAQE  AAAYYFKKRP  SQLTAEESIF  LASIIPKPKH  FRNSFTGDMK  LKENLEGYYR600
LIAERLAKKG  VISEAAADSI  RPEINVTGEA  RKDLERDSIQ  640

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help