CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QCI96539.1

Basic Information

GenBank IDQCI96539.1
FamilyGT51
Sequence Length770
UniProt IDA0A4D7DQ87(100,100)Download
Average pLDDT?78.12
CAZy50 ID16925
CAZy50 RepNo, BCP55952.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID160699
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium larrymoorei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAGSGKSRQR  VEPSFGDFHD  SGDDLRLDAS  DRVAGTNGGG  KKSGPSDAPT  KKRRSKTSAP60
KRQSRESSGG  FTGFIRSCIY  WCIVLGIWGG  IAVAGVVVYY  GARMPSASTW  TIPERPPNLK120
IVAVDGTVLA  NRGTTGGEAL  SLEDMSPYIP  QAVIAIEDRR  FYSHFGVDPL  GLGRAIVTNL180
MHGRTVQGGS  TLTQQLAKNL  FLSPEQTFER  KIQEALLAIW  LEQKYTKDQI  LAMYLNRVYF240
GSNAYGVEAA  ARRYFNKSAR  DVNLGEAAML  AGLLKAPSRL  SPARDPQAAE  ERAQVVLQSM300
QDVGFISESE  IKTAMSQPPT  KAKRFWSGAE  HYAADMVLDE  VRGLIGDIKQ  DLTVDTTIDL360
SLEKDAEKSL  GDVLKGEGKK  LGASQAALVS  IDGSGAVRAV  VGGADYAESQ  FNRATKAKRQ420
PGSAFKPFVY  IAALESGLTP  NSVRNDAPVK  IGNWTPENYD  QKYRGEVTLA  TALANSLNTI480
AAQLVMEVGP  NRVTQVAHRM  GIESDLQANA  SIALGTSEVS  LLELTSAYAP  MMNGGFKATP540
HIVKRITDSD  GKVLYENKYD  DPPRVLDEGI  AATMNGMLTG  VINEGTGKAA  RLKGWQAAGK600
SGTTQSFRDA  LFVGYTSQLT  TGVWFGNDDG  TSMKKVTGGG  LPAKAWKEFM  TAAHSGLSPS660
PLFGLGTYGA  PDIGQPMAQT  PAAPPSTIGD  IISHALGGGS  APTPPEYPAA  PVGREQTAGT720
VPAPPSEYPS  QAYPQQQYGG  PVPPADVGGG  SPQRQNGPKQ  TTLFDILMGN  770

Predicted 3D structure by AlphaFold2 with pLDDT = 78.12 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(126-301)

MAGSGKSRQR  VEPSFGDFHD  SGDDLRLDAS  DRVAGTNGGG  KKSGPSDAPT  KKRRSKTSAP60
KRQSRESSGG  FTGFIRSCIY  WCIVLGIWGG  IAVAGVVVYY  GARMPSASTW  TIPERPPNLK120
IVAVDGTVLA  NRGTTGGEAL  SLEDMSPYIP  QAVIAIEDRR  FYSHFGVDPL  GLGRAIVTNL180
MHGRTVQGGS  TLTQQLAKNL  FLSPEQTFER  KIQEALLAIW  LEQKYTKDQI  LAMYLNRVYF240
GSNAYGVEAA  ARRYFNKSAR  DVNLGEAAML  AGLLKAPSRL  SPARDPQAAE  ERAQVVLQSM300
QDVGFISESE  IKTAMSQPPT  KAKRFWSGAE  HYAADMVLDE  VRGLIGDIKQ  DLTVDTTIDL360
SLEKDAEKSL  GDVLKGEGKK  LGASQAALVS  IDGSGAVRAV  VGGADYAESQ  FNRATKAKRQ420
PGSAFKPFVY  IAALESGLTP  NSVRNDAPVK  IGNWTPENYD  QKYRGEVTLA  TALANSLNTI480
AAQLVMEVGP  NRVTQVAHRM  GIESDLQANA  SIALGTSEVS  LLELTSAYAP  MMNGGFKATP540
HIVKRITDSD  GKVLYENKYD  DPPRVLDEGI  AATMNGMLTG  VINEGTGKAA  RLKGWQAAGK600
SGTTQSFRDA  LFVGYTSQLT  TGVWFGNDDG  TSMKKVTGGG  LPAKAWKEFM  TAAHSGLSPS660
PLFGLGTYGA  PDIGQPMAQT  PAAPPSTIGD  IISHALGGGS  APTPPEYPAA  PVGREQTAGT720
VPAPPSEYPS  QAYPQQQYGG  PVPPADVGGG  SPQRQNGPKQ  TTLFDILMGN  770

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help