Information for CAZyme ID: QCI96539.1
Basic Information
GenBank ID | QCI96539.1 |
Family | GT51 |
Sequence Length | 770 |
UniProt ID | A0A4D7DQ87(100,100)![]() |
Average pLDDT? | 78.12 |
CAZy50 ID | 16925 |
CAZy50 Rep | No, BCP55952.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 160699 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Alphaproteobacteria |
Order | Hyphomicrobiales |
Family | Rhizobiaceae |
Genus | Agrobacterium |
Species | Agrobacterium larrymoorei |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MAGSGKSRQR VEPSFGDFHD SGDDLRLDAS DRVAGTNGGG KKSGPSDAPT KKRRSKTSAP | 60 |
KRQSRESSGG FTGFIRSCIY WCIVLGIWGG IAVAGVVVYY GARMPSASTW TIPERPPNLK | 120 |
IVAVDGTVLA NRGTTGGEAL SLEDMSPYIP QAVIAIEDRR FYSHFGVDPL GLGRAIVTNL | 180 |
MHGRTVQGGS TLTQQLAKNL FLSPEQTFER KIQEALLAIW LEQKYTKDQI LAMYLNRVYF | 240 |
GSNAYGVEAA ARRYFNKSAR DVNLGEAAML AGLLKAPSRL SPARDPQAAE ERAQVVLQSM | 300 |
QDVGFISESE IKTAMSQPPT KAKRFWSGAE HYAADMVLDE VRGLIGDIKQ DLTVDTTIDL | 360 |
SLEKDAEKSL GDVLKGEGKK LGASQAALVS IDGSGAVRAV VGGADYAESQ FNRATKAKRQ | 420 |
PGSAFKPFVY IAALESGLTP NSVRNDAPVK IGNWTPENYD QKYRGEVTLA TALANSLNTI | 480 |
AAQLVMEVGP NRVTQVAHRM GIESDLQANA SIALGTSEVS LLELTSAYAP MMNGGFKATP | 540 |
HIVKRITDSD GKVLYENKYD DPPRVLDEGI AATMNGMLTG VINEGTGKAA RLKGWQAAGK | 600 |
SGTTQSFRDA LFVGYTSQLT TGVWFGNDDG TSMKKVTGGG LPAKAWKEFM TAAHSGLSPS | 660 |
PLFGLGTYGA PDIGQPMAQT PAAPPSTIGD IISHALGGGS APTPPEYPAA PVGREQTAGT | 720 |
VPAPPSEYPS QAYPQQQYGG PVPPADVGGG SPQRQNGPKQ TTLFDILMGN | 770 |
Predicted 3D structure by AlphaFold2 with pLDDT = 78.12 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT51(126-301)
MAGSGKSRQR VEPSFGDFHD SGDDLRLDAS DRVAGTNGGG KKSGPSDAPT KKRRSKTSAP | 60 |
KRQSRESSGG FTGFIRSCIY WCIVLGIWGG IAVAGVVVYY GARMPSASTW TIPERPPNLK | 120 |
IVAVDGTVLA NRGTTGGEAL SLEDMSPYIP QAVIAIEDRR FYSHFGVDPL GLGRAIVTNL | 180 |
MHGRTVQGGS TLTQQLAKNL FLSPEQTFER KIQEALLAIW LEQKYTKDQI LAMYLNRVYF | 240 |
GSNAYGVEAA ARRYFNKSAR DVNLGEAAML AGLLKAPSRL SPARDPQAAE ERAQVVLQSM | 300 |
QDVGFISESE IKTAMSQPPT KAKRFWSGAE HYAADMVLDE VRGLIGDIKQ DLTVDTTIDL | 360 |
SLEKDAEKSL GDVLKGEGKK LGASQAALVS IDGSGAVRAV VGGADYAESQ FNRATKAKRQ | 420 |
PGSAFKPFVY IAALESGLTP NSVRNDAPVK IGNWTPENYD QKYRGEVTLA TALANSLNTI | 480 |
AAQLVMEVGP NRVTQVAHRM GIESDLQANA SIALGTSEVS LLELTSAYAP MMNGGFKATP | 540 |
HIVKRITDSD GKVLYENKYD DPPRVLDEGI AATMNGMLTG VINEGTGKAA RLKGWQAAGK | 600 |
SGTTQSFRDA LFVGYTSQLT TGVWFGNDDG TSMKKVTGGG LPAKAWKEFM TAAHSGLSPS | 660 |
PLFGLGTYGA PDIGQPMAQT PAAPPSTIGD IISHALGGGS APTPPEYPAA PVGREQTAGT | 720 |
VPAPPSEYPS QAYPQQQYGG PVPPADVGGG SPQRQNGPKQ TTLFDILMGN | 770 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.