CAZyme3D

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Entry ID

Information for CAZyme ID: QCE40164.1

Basic Information

GenBank IDQCE40164.1
FamilyPL7
Sequence Length785
UniProt IDA0A4P7WSZ8(100,100)Download
Average pLDDT?78.43
CAZy50 ID28772
CAZy50 RepNo, QDO95512.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2570561
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPsychroserpens
SpeciesPsychroserpens sp. NJDZ02

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKQNLQTPKI  KERLLKLFIT  GMLVSATFIC  QVKAQSNLVP  SDLLNAWNSN  ISDNTTYPHC60
EQWKITYPTS  EEDKTLCGED  NNEFYYVNST  NDGIVFYAPV  RSDNGTTPNS  KNIRSELRER120
DIDGESDKYW  TTEGRHVIYV  KQAITHLPIN  VNQLVATQIH  GNKSEGIDDA  LVVRLEDDHL180
FLSFNGGELR  SNVTITNNYA  LGTLHEVIFE  VLDDKHYVYY  SEDGNLKAAY  QSGNASSYLV240
KDNGNEILMD  INYDDAYFKV  GNYTQSNPTK  EGDDTDNPDN  YGEVVVYDLY  VDHADAGIVT300
PISCNATAPS  GLSVTNVSTT  QATLSWNYNT  TIDHYNVRYK  EIGSATWINE  SSITTGSITL360
NNLSTDTEYE  WQIRAKCADD  SGSDYSDAQG  ANFTTNVTST  TCNAIAPSGL  TVTGVSTTET420
TLNWNFDTAI  DYYDVRYRKV  GNTNWSFKYS  ITAGNVTLTN  LNEDTDYEWQ  IIAKCTDDSG480
SNYSDAEGPS  FKTTSNSSSI  NCSDTPTGLN  ISNLTSNSVT  LNWNYVSSVD  HYNVRYKKLG540
DSDWRYVNSI  QTGSVTLTDV  NTSSTYEWQI  RAKCSDGSGS  NYSDGQGPDF  LPSSSNDISI600
TPSCSDTPTG  LYITNLTNNS  VTVNWDYYSS  VDHYNVRYKK  TGDSNWRYKN  SITTGSITLT660
DVNTSSSYEW  QIRAKCTDGS  GSDYTDGQGP  NFLPTASNKS  AQPSINTYTN  SSKTNLIIKI720
DDQTNTKEKQ  SVKIFNIYGR  LVYEKSKISS  NKEIVLDNNI  EDGIYVIMLF  NENGEIIESK780
KIIKN785

Predicted 3D structure by AlphaFold2 with pLDDT = 78.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL7_3(60-293)

MKQNLQTPKI  KERLLKLFIT  GMLVSATFIC  QVKAQSNLVP  SDLLNAWNSN  ISDNTTYPHC60
EQWKITYPTS  EEDKTLCGED  NNEFYYVNST  NDGIVFYAPV  RSDNGTTPNS  KNIRSELRER120
DIDGESDKYW  TTEGRHVIYV  KQAITHLPIN  VNQLVATQIH  GNKSEGIDDA  LVVRLEDDHL180
FLSFNGGELR  SNVTITNNYA  LGTLHEVIFE  VLDDKHYVYY  SEDGNLKAAY  QSGNASSYLV240
KDNGNEILMD  INYDDAYFKV  GNYTQSNPTK  EGDDTDNPDN  YGEVVVYDLY  VDHADAGIVT300
PISCNATAPS  GLSVTNVSTT  QATLSWNYNT  TIDHYNVRYK  EIGSATWINE  SSITTGSITL360
NNLSTDTEYE  WQIRAKCADD  SGSDYSDAQG  ANFTTNVTST  TCNAIAPSGL  TVTGVSTTET420
TLNWNFDTAI  DYYDVRYRKV  GNTNWSFKYS  ITAGNVTLTN  LNEDTDYEWQ  IIAKCTDDSG480
SNYSDAEGPS  FKTTSNSSSI  NCSDTPTGLN  ISNLTSNSVT  LNWNYVSSVD  HYNVRYKKLG540
DSDWRYVNSI  QTGSVTLTDV  NTSSTYEWQI  RAKCSDGSGS  NYSDGQGPDF  LPSSSNDISI600
TPSCSDTPTG  LYITNLTNNS  VTVNWDYYSS  VDHYNVRYKK  TGDSNWRYKN  SITTGSITLT660
DVNTSSSYEW  QIRAKCTDGS  GSDYTDGQGP  NFLPTASNKS  AQPSINTYTN  SSKTNLIIKI720
DDQTNTKEKQ  SVKIFNIYGR  LVYEKSKISS  NKEIVLDNNI  EDGIYVIMLF  NENGEIIESK780
KIIKN785

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help