CAZyme3D

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Entry ID

Information for CAZyme ID: QBX71306.1

Basic Information

GenBank IDQBX71306.1
FamilyGH102
Sequence Length383
UniProt IDA0A1V2F6J7(100,100)Download
Average pLDDT?87.68
CAZy50 ID93016
CAZy50 RepNo, CAE6890627.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID644
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusAeromonas
SpeciesAeromonas hydrophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKHAYWLTA  AVLGLAGCAG  NSEQAQVPKN  KPDARCFLNC  EVPENLGKQY  LDGPLPDDLV60
RVERVNSRQR  ADYSKFGPQS  RLVLERSGKM  TRRYGELYHQ  LSRWVANGGD  PAQITRYGIS120
LAQLGGSDRM  GNVLFTGYYS  PVLEVRHRPD  AKYKYPIYAM  PKCGGRCPSR  AQIHQGALAN180
RGLELGYSKS  LIDNFLMDVQ  GSGFVHYGDD  DRLQYLGYSG  KNGHGYVSIG  RVLIDRGEVP240
KEQMSMKAIK  EWANRQPEES  VKELVEQNPS  YVFFERRPTN  DVIGAAGIPL  LPMAAVAADK300
TLLPMGTPIL  AEVPLLDKEG  NWTGKHQLRL  LIALDVGGAV  KKGHLDLYHG  MGEKAGVAAG360
HYKHFGRVWK  LGLHHGPTAA  PWL383

Predicted 3D structure by AlphaFold2 with pLDDT = 87.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(144-275)

MNKHAYWLTA  AVLGLAGCAG  NSEQAQVPKN  KPDARCFLNC  EVPENLGKQY  LDGPLPDDLV60
RVERVNSRQR  ADYSKFGPQS  RLVLERSGKM  TRRYGELYHQ  LSRWVANGGD  PAQITRYGIS120
LAQLGGSDRM  GNVLFTGYYS  PVLEVRHRPD  AKYKYPIYAM  PKCGGRCPSR  AQIHQGALAN180
RGLELGYSKS  LIDNFLMDVQ  GSGFVHYGDD  DRLQYLGYSG  KNGHGYVSIG  RVLIDRGEVP240
KEQMSMKAIK  EWANRQPEES  VKELVEQNPS  YVFFERRPTN  DVIGAAGIPL  LPMAAVAADK300
TLLPMGTPIL  AEVPLLDKEG  NWTGKHQLRL  LIALDVGGAV  KKGHLDLYHG  MGEKAGVAAG360
HYKHFGRVWK  LGLHHGPTAA  PWL383

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help