CAZyme3D

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Entry ID

Information for CAZyme ID: QBR04894.1

Basic Information

GenBank IDQBR04894.1
FamilyGT2
Sequence Length243
UniProt IDA0A4P7DD73(100,100)Download
Average pLDDT?88.57
CAZy50 ID37172
CAZy50 RepNo, QKW23993.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2420135
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. S501

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTDYAQADPA  APVRADIVLP  CLDEAEALPS  VLARVPEGWR  AIVVDNGSTD  GSAAIARSLG60
ATVVHEPRRG  FGSACHAGLL  AAEAEYVCFC  DCDGSLDPGL  LTGFVRRVAE  GRCDLLLGRR120
RPTTRGAWPP  HARAGNFALS  RMVRRRTGLR  LHDLGPMRAV  RRETLLALGL  TDRRSGYPLE180
MVVRASDAGL  RVAETDVPYA  PRTGRSKVTG  TWRGTWHAVR  DMREVLRQPE  YPTPRSIKAE240
ATR243

Predicted 3D structure by AlphaFold2 with pLDDT = 88.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(16-164)

MTDYAQADPA  APVRADIVLP  CLDEAEALPS  VLARVPEGWR  AIVVDNGSTD  GSAAIARSLG60
ATVVHEPRRG  FGSACHAGLL  AAEAEYVCFC  DCDGSLDPGL  LTGFVRRVAE  GRCDLLLGRR120
RPTTRGAWPP  HARAGNFALS  RMVRRRTGLR  LHDLGPMRAV  RRETLLALGL  TDRRSGYPLE180
MVVRASDAGL  RVAETDVPYA  PRTGRSKVTG  TWRGTWHAVR  DMREVLRQPE  YPTPRSIKAE240
ATR243

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help