Information for CAZyme ID: QBQ42976.1
Basic Information
GenBank ID | QBQ42976.1 |
Family | GH88 |
Sequence Length | 421 |
UniProt ID | A0A7Z1X3E3(100,100)![]() |
Average pLDDT? | 94.14 |
CAZy50 ID | 87753 |
CAZy50 Rep | No, CDS94755.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 561061 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Sphingobacteriia |
Order | Sphingobacteriales |
Family | Sphingobacteriaceae |
Genus | Sphingobacterium |
Species | Sphingobacterium psychroaquaticum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MNIKKTLTVF VLLACGTYSP VGAQSKNQHL SLSEQFVTDN LKDAARQIKY LESQIKESDI | 60 |
PTSFSQGKHV NWGTSWWCSG FYPGTALYLY EATGDADLLT IAKSKLKYLE KEKNNKGTHD | 120 |
LGFMLFCSFG NALRLTGDSA TYKPILATGA ASLSTRFKES TQTIRSWDGG KNWDGQPWTY | 180 |
PVIIDNMMNL EFLTQATKIT RDPSFTRIAK IHANTTIKQH FRKDYSSYHV VDYDPKDGHV | 240 |
ISKKTAQGAF DESAWARGQA WALYGYTMMY RETKDKSYLK QARRIATFYL NHPNMPSDMV | 300 |
PYWDFDQNKL KADSKYYAQK DLRDASTAAV VSSALLELSL YTKGKERQLY VQKAEQMLRS | 360 |
LSGAPYKAAY QDNGGYILKH SVGSIPHKTE IDVPLTYADY YYVEALLRYK RMLAGDTVIK | 420 |
Q | 421 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.14 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH88(74-409)
MNIKKTLTVF VLLACGTYSP VGAQSKNQHL SLSEQFVTDN LKDAARQIKY LESQIKESDI | 60 |
PTSFSQGKHV NWGTSWWCSG FYPGTALYLY EATGDADLLT IAKSKLKYLE KEKNNKGTHD | 120 |
LGFMLFCSFG NALRLTGDSA TYKPILATGA ASLSTRFKES TQTIRSWDGG KNWDGQPWTY | 180 |
PVIIDNMMNL EFLTQATKIT RDPSFTRIAK IHANTTIKQH FRKDYSSYHV VDYDPKDGHV | 240 |
ISKKTAQGAF DESAWARGQA WALYGYTMMY RETKDKSYLK QARRIATFYL NHPNMPSDMV | 300 |
PYWDFDQNKL KADSKYYAQK DLRDASTAAV VSSALLELSL YTKGKERQLY VQKAEQMLRS | 360 |
LSGAPYKAAY QDNGGYILKH SVGSIPHKTE IDVPLTYADY YYVEALLRYK RMLAGDTVIK | 420 |
Q | 421 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.