CAZyme3D

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Entry ID

Information for CAZyme ID: QBQ42976.1

Basic Information

GenBank IDQBQ42976.1
FamilyGH88
Sequence Length421
UniProt IDA0A7Z1X3E3(100,100)Download
Average pLDDT?94.14
CAZy50 ID87753
CAZy50 RepNo, CDS94755.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID561061
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium psychroaquaticum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNIKKTLTVF  VLLACGTYSP  VGAQSKNQHL  SLSEQFVTDN  LKDAARQIKY  LESQIKESDI60
PTSFSQGKHV  NWGTSWWCSG  FYPGTALYLY  EATGDADLLT  IAKSKLKYLE  KEKNNKGTHD120
LGFMLFCSFG  NALRLTGDSA  TYKPILATGA  ASLSTRFKES  TQTIRSWDGG  KNWDGQPWTY180
PVIIDNMMNL  EFLTQATKIT  RDPSFTRIAK  IHANTTIKQH  FRKDYSSYHV  VDYDPKDGHV240
ISKKTAQGAF  DESAWARGQA  WALYGYTMMY  RETKDKSYLK  QARRIATFYL  NHPNMPSDMV300
PYWDFDQNKL  KADSKYYAQK  DLRDASTAAV  VSSALLELSL  YTKGKERQLY  VQKAEQMLRS360
LSGAPYKAAY  QDNGGYILKH  SVGSIPHKTE  IDVPLTYADY  YYVEALLRYK  RMLAGDTVIK420
Q421

Predicted 3D structure by AlphaFold2 with pLDDT = 94.14 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(74-409)

MNIKKTLTVF  VLLACGTYSP  VGAQSKNQHL  SLSEQFVTDN  LKDAARQIKY  LESQIKESDI60
PTSFSQGKHV  NWGTSWWCSG  FYPGTALYLY  EATGDADLLT  IAKSKLKYLE  KEKNNKGTHD120
LGFMLFCSFG  NALRLTGDSA  TYKPILATGA  ASLSTRFKES  TQTIRSWDGG  KNWDGQPWTY180
PVIIDNMMNL  EFLTQATKIT  RDPSFTRIAK  IHANTTIKQH  FRKDYSSYHV  VDYDPKDGHV240
ISKKTAQGAF  DESAWARGQA  WALYGYTMMY  RETKDKSYLK  QARRIATFYL  NHPNMPSDMV300
PYWDFDQNKL  KADSKYYAQK  DLRDASTAAV  VSSALLELSL  YTKGKERQLY  VQKAEQMLRS360
LSGAPYKAAY  QDNGGYILKH  SVGSIPHKTE  IDVPLTYADY  YYVEALLRYK  RMLAGDTVIK420
Q421

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help