Information for CAZyme ID: QBP75922.1
Basic Information
GenBank ID | QBP75922.1 |
Family | CBM48, GH13_9 |
Sequence Length | 812 |
UniProt ID | A0A4P7A8F1(100,100)![]() |
Average pLDDT? | 90.29 |
CAZy50 ID | 24242 |
CAZy50 Rep | No, ABC35639.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 863372 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Burkholderiales |
Family | Oxalobacteraceae |
Genus | Herbaspirillum |
Species | Herbaspirillum huttiense |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSGMSVTAYR ASTTPQEETS DASSAAPGSA SAQPPSSSHS SHSPEFPEQT ALSLSLEEQG | 60 |
LLEALLAGRL TQPFGLLGPR YASQSSGVSA IRAFHPGAAA VRVRCRHSGA LLGELQQFEL | 120 |
HGQPSGFFSG VATGLDQRRH QVPYVFEVDW LIPDGSRSVQ STEDPYAFGL LLGELDLHLL | 180 |
REGRHRQLAD CLGARPMDID GVPGTRFAVW APNAERVSVV GDFNQWDGRR HVMRLRHESG | 240 |
VWELFIPRIG PGDVYKYEIL GRDGALLPLK ADPVARATEP PPATASVVAD ARPYLWQDQQ | 300 |
WMAERAQRQS LSAPMSIYEL HPASWRRIPE QAHRNLSWDE LADELIPYVV GMGFTHIELM | 360 |
PVMEHPFGGS WGYQPISMFA PSARFGKPER FAAFVDRCHQ AGIGVLLDWV PAHFPSDQHG | 420 |
LAQFDGTALY EHADPREGFH QDWNTLIFNL GRNEVRGFLI ASALEWIEHF HVDGLRVDAV | 480 |
ASMLYRDYSR KSGEWVPNIH GGRENLEAVA FLRELNTVVA QRCPGVLMIA EESTSWPGVT | 540 |
SEVSNEADHH GLGFSYKWNM GWMNDTLRYM QHDPLFRRYH HHDMTFGLLY GFSENFILPI | 600 |
SHDEVVHGKR ALLNKMPGDE WRRFANVRAY YGFMWTHPGK KLLFMGSEFG QPDEFDHDKS | 660 |
PYWHLLNEHG DHPAGHRQLR QLVSDLNHLY RSEPALHQRD CRADGFSWAV GDDSVNSVLA | 720 |
YFRYADEGPP VLIVVNLTPV PRTHYRIGVP PIAPGHHGVW REVLNTDAAV YGGSNSGNMG | 780 |
QVQVQEFGWH GHPTSIELNL PPLSTLILRR ES | 812 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.29 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(192-278)+GH13_9(347-651)
MSGMSVTAYR ASTTPQEETS DASSAAPGSA SAQPPSSSHS SHSPEFPEQT ALSLSLEEQG | 60 |
LLEALLAGRL TQPFGLLGPR YASQSSGVSA IRAFHPGAAA VRVRCRHSGA LLGELQQFEL | 120 |
HGQPSGFFSG VATGLDQRRH QVPYVFEVDW LIPDGSRSVQ STEDPYAFGL LLGELDLHLL | 180 |
REGRHRQLAD CLGARPMDID GVPGTRFAVW APNAERVSVV GDFNQWDGRR HVMRLRHESG | 240 |
VWELFIPRIG PGDVYKYEIL GRDGALLPLK ADPVARATEP PPATASVVAD ARPYLWQDQQ | 300 |
WMAERAQRQS LSAPMSIYEL HPASWRRIPE QAHRNLSWDE LADELIPYVV GMGFTHIELM | 360 |
PVMEHPFGGS WGYQPISMFA PSARFGKPER FAAFVDRCHQ AGIGVLLDWV PAHFPSDQHG | 420 |
LAQFDGTALY EHADPREGFH QDWNTLIFNL GRNEVRGFLI ASALEWIEHF HVDGLRVDAV | 480 |
ASMLYRDYSR KSGEWVPNIH GGRENLEAVA FLRELNTVVA QRCPGVLMIA EESTSWPGVT | 540 |
SEVSNEADHH GLGFSYKWNM GWMNDTLRYM QHDPLFRRYH HHDMTFGLLY GFSENFILPI | 600 |
SHDEVVHGKR ALLNKMPGDE WRRFANVRAY YGFMWTHPGK KLLFMGSEFG QPDEFDHDKS | 660 |
PYWHLLNEHG DHPAGHRQLR QLVSDLNHLY RSEPALHQRD CRADGFSWAV GDDSVNSVLA | 720 |
YFRYADEGPP VLIVVNLTPV PRTHYRIGVP PIAPGHHGVW REVLNTDAAV YGGSNSGNMG | 780 |
QVQVQEFGWH GHPTSIELNL PPLSTLILRR ES | 812 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.