CAZyme3D

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Entry ID

Information for CAZyme ID: QBP75922.1

Basic Information

GenBank IDQBP75922.1
FamilyCBM48, GH13_9
Sequence Length812
UniProt IDA0A4P7A8F1(100,100)Download
Average pLDDT?90.29
CAZy50 ID24242
CAZy50 RepNo, ABC35639.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID863372
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum huttiense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSGMSVTAYR  ASTTPQEETS  DASSAAPGSA  SAQPPSSSHS  SHSPEFPEQT  ALSLSLEEQG60
LLEALLAGRL  TQPFGLLGPR  YASQSSGVSA  IRAFHPGAAA  VRVRCRHSGA  LLGELQQFEL120
HGQPSGFFSG  VATGLDQRRH  QVPYVFEVDW  LIPDGSRSVQ  STEDPYAFGL  LLGELDLHLL180
REGRHRQLAD  CLGARPMDID  GVPGTRFAVW  APNAERVSVV  GDFNQWDGRR  HVMRLRHESG240
VWELFIPRIG  PGDVYKYEIL  GRDGALLPLK  ADPVARATEP  PPATASVVAD  ARPYLWQDQQ300
WMAERAQRQS  LSAPMSIYEL  HPASWRRIPE  QAHRNLSWDE  LADELIPYVV  GMGFTHIELM360
PVMEHPFGGS  WGYQPISMFA  PSARFGKPER  FAAFVDRCHQ  AGIGVLLDWV  PAHFPSDQHG420
LAQFDGTALY  EHADPREGFH  QDWNTLIFNL  GRNEVRGFLI  ASALEWIEHF  HVDGLRVDAV480
ASMLYRDYSR  KSGEWVPNIH  GGRENLEAVA  FLRELNTVVA  QRCPGVLMIA  EESTSWPGVT540
SEVSNEADHH  GLGFSYKWNM  GWMNDTLRYM  QHDPLFRRYH  HHDMTFGLLY  GFSENFILPI600
SHDEVVHGKR  ALLNKMPGDE  WRRFANVRAY  YGFMWTHPGK  KLLFMGSEFG  QPDEFDHDKS660
PYWHLLNEHG  DHPAGHRQLR  QLVSDLNHLY  RSEPALHQRD  CRADGFSWAV  GDDSVNSVLA720
YFRYADEGPP  VLIVVNLTPV  PRTHYRIGVP  PIAPGHHGVW  REVLNTDAAV  YGGSNSGNMG780
QVQVQEFGWH  GHPTSIELNL  PPLSTLILRR  ES812

Predicted 3D structure by AlphaFold2 with pLDDT = 90.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(192-278)+GH13_9(347-651)

MSGMSVTAYR  ASTTPQEETS  DASSAAPGSA  SAQPPSSSHS  SHSPEFPEQT  ALSLSLEEQG60
LLEALLAGRL  TQPFGLLGPR  YASQSSGVSA  IRAFHPGAAA  VRVRCRHSGA  LLGELQQFEL120
HGQPSGFFSG  VATGLDQRRH  QVPYVFEVDW  LIPDGSRSVQ  STEDPYAFGL  LLGELDLHLL180
REGRHRQLAD  CLGARPMDID  GVPGTRFAVW  APNAERVSVV  GDFNQWDGRR  HVMRLRHESG240
VWELFIPRIG  PGDVYKYEIL  GRDGALLPLK  ADPVARATEP  PPATASVVAD  ARPYLWQDQQ300
WMAERAQRQS  LSAPMSIYEL  HPASWRRIPE  QAHRNLSWDE  LADELIPYVV  GMGFTHIELM360
PVMEHPFGGS  WGYQPISMFA  PSARFGKPER  FAAFVDRCHQ  AGIGVLLDWV  PAHFPSDQHG420
LAQFDGTALY  EHADPREGFH  QDWNTLIFNL  GRNEVRGFLI  ASALEWIEHF  HVDGLRVDAV480
ASMLYRDYSR  KSGEWVPNIH  GGRENLEAVA  FLRELNTVVA  QRCPGVLMIA  EESTSWPGVT540
SEVSNEADHH  GLGFSYKWNM  GWMNDTLRYM  QHDPLFRRYH  HHDMTFGLLY  GFSENFILPI600
SHDEVVHGKR  ALLNKMPGDE  WRRFANVRAY  YGFMWTHPGK  KLLFMGSEFG  QPDEFDHDKS660
PYWHLLNEHG  DHPAGHRQLR  QLVSDLNHLY  RSEPALHQRD  CRADGFSWAV  GDDSVNSVLA720
YFRYADEGPP  VLIVVNLTPV  PRTHYRIGVP  PIAPGHHGVW  REVLNTDAAV  YGGSNSGNMG780
QVQVQEFGWH  GHPTSIELNL  PPLSTLILRR  ES812

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help