CAZyme3D

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Entry ID

Information for CAZyme ID: QBO58360.1

Basic Information

GenBank IDQBO58360.1
FamilyGT101
Sequence Length272
UniProt IDA0A4P6ZFF9(100,100)Download
Average pLDDT?92.92
CAZy50 ID41181
CAZy50 RepNo, AZI69916.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2547600
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusChryseobacterium
SpeciesChryseobacterium salivictor

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKWSTIVVHQ  FNKALNVFKL  NISDTGASIE  LLCQNNFSMA  RYGDGELNIM  MGGDIHFQPY60
NSELAGRLKE  ILRSYDEQSA  LKIGVPLAIN  TTAGYNKTAK  DFWEMNLSSG  RMHWFRYCGL120
RKKFINASLT  RCYIDYEEKE  QSLLWFQQIQ  ALWRNKKVLV  VEGAASRMGV  QNNLFDNTAS180
VNRIITKSSD  AWIVYAWILE  TTLKVAKNYD  LILVSLGPTA  TVLAADVSKH  GYRILDIGHI240
SLEYDEYQND  GLGVNQNDCK  IKYQNQIIEQ  IF272

Predicted 3D structure by AlphaFold2 with pLDDT = 92.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT101(39-250)

MKWSTIVVHQ  FNKALNVFKL  NISDTGASIE  LLCQNNFSMA  RYGDGELNIM  MGGDIHFQPY60
NSELAGRLKE  ILRSYDEQSA  LKIGVPLAIN  TTAGYNKTAK  DFWEMNLSSG  RMHWFRYCGL120
RKKFINASLT  RCYIDYEEKE  QSLLWFQQIQ  ALWRNKKVLV  VEGAASRMGV  QNNLFDNTAS180
VNRIITKSSD  AWIVYAWILE  TTLKVAKNYD  LILVSLGPTA  TVLAADVSKH  GYRILDIGHI240
SLEYDEYQND  GLGVNQNDCK  IKYQNQIIEQ  IF272

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help