CAZyme3D

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Entry ID

Information for CAZyme ID: QBN18680.1

Basic Information

GenBank IDQBN18680.1
FamilyGH171
Sequence Length390
UniProt IDA0A4P6YE31(100,100)Download
Average pLDDT?91.59
CAZy50 ID73305
CAZy50 RepNo, UAB80133.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2547394
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium nackdongense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNSIYASVL  FFLIFLVACT  AQKKGSPNPS  AIQTAADNTE  AYLPLLRGKK  VGIVTNQTGI60
LSDKTHLVDF  LQSKNIKIRT  IFAPEHGFRG  TADAGEHVID  GRDAKTGLTI  ISLYGDNRKP120
KPAQLAGIDL  MVFDLQDVGL  RFYTYISTLH  YVMEACAENA  IPLLILDRPN  PNGNIVDGPI180
LEKEFTSFVG  MHPVPVLYGM  TIGEYGKMIN  GEKWLQNGAQ  CKLTVIPCLN  YNRKMSYSLP240
VKPSPNLPND  QSINLYASLC  LFEGTNVSVG  RGTEQQFQIY  GSPFLPKSDF  SFIPKPNFGA300
KEPMHRDQIC  YGEDLSAVAK  VSQLELKWLL  KAYNATSDKS  KFFNSFFTKL  AGTKELQQQI360
EAGTSEKEIR  KSWEKGLRDF  EEIRNKYLIY  390

Predicted 3D structure by AlphaFold2 with pLDDT = 91.59 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(51-390)

MKNSIYASVL  FFLIFLVACT  AQKKGSPNPS  AIQTAADNTE  AYLPLLRGKK  VGIVTNQTGI60
LSDKTHLVDF  LQSKNIKIRT  IFAPEHGFRG  TADAGEHVID  GRDAKTGLTI  ISLYGDNRKP120
KPAQLAGIDL  MVFDLQDVGL  RFYTYISTLH  YVMEACAENA  IPLLILDRPN  PNGNIVDGPI180
LEKEFTSFVG  MHPVPVLYGM  TIGEYGKMIN  GEKWLQNGAQ  CKLTVIPCLN  YNRKMSYSLP240
VKPSPNLPND  QSINLYASLC  LFEGTNVSVG  RGTEQQFQIY  GSPFLPKSDF  SFIPKPNFGA300
KEPMHRDQIC  YGEDLSAVAK  VSQLELKWLL  KAYNATSDKS  KFFNSFFTKL  AGTKELQQQI360
EAGTSEKEIR  KSWEKGLRDF  EEIRNKYLIY  390

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help