CAZyme3D

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Entry ID

Information for CAZyme ID: QBL10497.1

Basic Information

GenBank IDQBL10497.1
FamilyGH171
Sequence Length389
UniProt IDA0A4P6VTH5(100,100)Download
Average pLDDT?91.40
CAZy50 ID13276
CAZy50 RepNo, QDE28871.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2545632
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sp. D18

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTLVWLLLS  GLLLINAANA  NNLGATPIQT  GAEQLERYLP  LLQGKRVAML  VNQTSQVGEQ60
HLVDVLLANN  VNIVSIFAPE  HGFRGDYDAG  AKVNNSTDSK  TGLPLLSLYG  ANKKPSAAQM120
QQVDIVVFDI  QDVGVRYYTY  ISSMHYLMEA  AAQNNVAMLV  LDRPNPNGAY  VDGPVLDVKF180
QSFVGMHPIP  LLHGMTVGEL  AQMIKGEGWI  ANADKLTLNV  IPVAGYQRDM  PYALPVRPSP240
NLPNEQSIAL  YPSLGFFEAT  PLSIGRGTAF  AFQVIGYDKF  ALGDFAFTPV  STPGAALTPP300
LMNKALHGED  LRHVSASGLN  LSYLLRWQQL  FAKHNDVFFT  APAFMDKLAG  TDQLRLQITQ360
GMSEHDIRAS  WQAGLAQFKQ  QRQPYLLYR389

Predicted 3D structure by AlphaFold2 with pLDDT = 91.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(47-388)

MKTLVWLLLS  GLLLINAANA  NNLGATPIQT  GAEQLERYLP  LLQGKRVAML  VNQTSQVGEQ60
HLVDVLLANN  VNIVSIFAPE  HGFRGDYDAG  AKVNNSTDSK  TGLPLLSLYG  ANKKPSAAQM120
QQVDIVVFDI  QDVGVRYYTY  ISSMHYLMEA  AAQNNVAMLV  LDRPNPNGAY  VDGPVLDVKF180
QSFVGMHPIP  LLHGMTVGEL  AQMIKGEGWI  ANADKLTLNV  IPVAGYQRDM  PYALPVRPSP240
NLPNEQSIAL  YPSLGFFEAT  PLSIGRGTAF  AFQVIGYDKF  ALGDFAFTPV  STPGAALTPP300
LMNKALHGED  LRHVSASGLN  LSYLLRWQQL  FAKHNDVFFT  APAFMDKLAG  TDQLRLQITQ360
GMSEHDIRAS  WQAGLAQFKQ  QRQPYLLYR389

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help