CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QBI03149.1

Basic Information

GenBank IDQBI03149.1
FamilyGH3
Sequence Length497
UniProt IDA0A411X2F2(100,100)Download
Average pLDDT?93.19
CAZy50 ID63009
CAZy50 RepNo, AMO96352.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID321983
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusPseudoduganella
SpeciesPseudoduganella albidiflava

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNQPPNALRK  LAGQLIMIRF  PGTELDAATA  RFLEENGIRA  VCLFRGNMTD  QAQLSKLTAD60
LRAVLGPEAL  IAIDQEGGAV  VRSTWVPAPP  AAMGLGAADD  TGLAHRTGAA  VARAVKALGF120
NWNFAPVLDL  NNNPHNPVIA  ERSFGADPQR  AAQLAMAWMA  GSEEEGVACC  VKHFPGHGDT180
SVDSHRDLPT  VDKPRAELEA  FEFAPFRAAA  PVAPAVMTAH  IVYPAIDAAN  PATMSPAILD240
GILRREWNYG  GVIITDGMDM  HAIAGRYGAG  NAAVRALAAG  ADMVMALGTP  QTQDETLDAI300
AQAIADGTIS  RAQVDERLAR  LSALAAKYPC  APREYTEDAA  DRAVMAEGWR  RALTSRGAPR360
RPAAGAKVRL  VVRQDVVSDG  VSEAGVPAAR  VADALRHLHD  VELVTFADAE  SFDWSALPAD420
GRYTILASTS  RLRYGPHARA  TWRPDLHVAL  WNPYQALDID  APALMTYGFA  APALEAVAAW480
LAGELEAAGT  CPVPGFA497

Predicted 3D structure by AlphaFold2 with pLDDT = 93.19 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(65-285)

MNQPPNALRK  LAGQLIMIRF  PGTELDAATA  RFLEENGIRA  VCLFRGNMTD  QAQLSKLTAD60
LRAVLGPEAL  IAIDQEGGAV  VRSTWVPAPP  AAMGLGAADD  TGLAHRTGAA  VARAVKALGF120
NWNFAPVLDL  NNNPHNPVIA  ERSFGADPQR  AAQLAMAWMA  GSEEEGVACC  VKHFPGHGDT180
SVDSHRDLPT  VDKPRAELEA  FEFAPFRAAA  PVAPAVMTAH  IVYPAIDAAN  PATMSPAILD240
GILRREWNYG  GVIITDGMDM  HAIAGRYGAG  NAAVRALAAG  ADMVMALGTP  QTQDETLDAI300
AQAIADGTIS  RAQVDERLAR  LSALAAKYPC  APREYTEDAA  DRAVMAEGWR  RALTSRGAPR360
RPAAGAKVRL  VVRQDVVSDG  VSEAGVPAAR  VADALRHLHD  VELVTFADAE  SFDWSALPAD420
GRYTILASTS  RLRYGPHARA  TWRPDLHVAL  WNPYQALDID  APALMTYGFA  APALEAVAAW480
LAGELEAAGT  CPVPGFA497

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help