CAZyme3D

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Entry ID

Information for CAZyme ID: QAZ68277.1

Basic Information

GenBank IDQAZ68277.1
FamilyCBM48, GH13_11
Sequence Length722
UniProt IDA0A4P6HM42(100,100)Download
Average pLDDT?91.91
CAZy50 ID32042
CAZy50 RepNo, APU13588.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296842
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusSolidesulfovibrio
SpeciesSolidesulfovibrio carbinolicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNTRVDLYPT  EEIAGWLTRP  GRVLPYGPSL  VPGGVNFSIF  SSVATSCSLV  LFHREGGALL60
AELPIPLSYR  VGDVWAITVF  GLNPETFTYG  FRLDGPQHLA  ATQRCDFGRI  LLDPRSRAIT120
GRDVWGAPVD  WTDKFPYRGF  VVPEDYDWRG  DRPPGHSPED  LIIYEMHVRG  FTQHPNSGVA180
HPGTYAGLVE  KIPYLLDLGV  NCVELLPVFE  FDEYELSRPN  PITGGLNMNY  WGYSTSGFFA240
PKAGFATSGA  LGMQCDEFKE  MVRALHEAGI  EVILDVVFNH  TCEGDHRGPT  IHFRGLDDKA300
YYLLTPEGWY  YNFSGCGNSM  NCNHPIVRDF  VLECLRFWVA  EYHVDGFRFD  AAAILGRGSD360
GSPLSNPPLL  ETVAADPVLK  KTKLIAEAWD  AGGLYLLGKF  PNFGRFAEWN  GRFRDDGRDF420
LRGQPGMAGA  VATRLVGSPD  LYSAGGRGPR  ASINFLTCHD  GFTLRDLVSY  NSKHNEANDE480
GNRDGIDDNR  SWNCGIEGET  PDHFINDLRL  RQQKNALLFL  LVSRGIPMIL  MGDERCRTQG540
GNNNTYCHDT  TLNWLDWSLT  KSQQELFRFT  KMAIRLRLAH  PVFRASEHPR  GDRHGTHGIP600
EVVWHGCLPG  KPDWDSRLVA  VTLTGCFDNQ  PDIVYFAWNS  DHEPAFLSLP  EPPGGTWFTE660
ANTGCLTPDD  IHPPGGGPAM  QETCFLAPRS  AILLTVANSN  RPCNTGAVIR  YSNPDAYRES720
KP722

Predicted 3D structure by AlphaFold2 with pLDDT = 91.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(25-119)+GH13_11(182-538)

MNTRVDLYPT  EEIAGWLTRP  GRVLPYGPSL  VPGGVNFSIF  SSVATSCSLV  LFHREGGALL60
AELPIPLSYR  VGDVWAITVF  GLNPETFTYG  FRLDGPQHLA  ATQRCDFGRI  LLDPRSRAIT120
GRDVWGAPVD  WTDKFPYRGF  VVPEDYDWRG  DRPPGHSPED  LIIYEMHVRG  FTQHPNSGVA180
HPGTYAGLVE  KIPYLLDLGV  NCVELLPVFE  FDEYELSRPN  PITGGLNMNY  WGYSTSGFFA240
PKAGFATSGA  LGMQCDEFKE  MVRALHEAGI  EVILDVVFNH  TCEGDHRGPT  IHFRGLDDKA300
YYLLTPEGWY  YNFSGCGNSM  NCNHPIVRDF  VLECLRFWVA  EYHVDGFRFD  AAAILGRGSD360
GSPLSNPPLL  ETVAADPVLK  KTKLIAEAWD  AGGLYLLGKF  PNFGRFAEWN  GRFRDDGRDF420
LRGQPGMAGA  VATRLVGSPD  LYSAGGRGPR  ASINFLTCHD  GFTLRDLVSY  NSKHNEANDE480
GNRDGIDDNR  SWNCGIEGET  PDHFINDLRL  RQQKNALLFL  LVSRGIPMIL  MGDERCRTQG540
GNNNTYCHDT  TLNWLDWSLT  KSQQELFRFT  KMAIRLRLAH  PVFRASEHPR  GDRHGTHGIP600
EVVWHGCLPG  KPDWDSRLVA  VTLTGCFDNQ  PDIVYFAWNS  DHEPAFLSLP  EPPGGTWFTE660
ANTGCLTPDD  IHPPGGGPAM  QETCFLAPRS  AILLTVANSN  RPCNTGAVIR  YSNPDAYRES720
KP722

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help