CAZyme3D

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Entry ID

Information for CAZyme ID: QAY75727.1

Basic Information

GenBank IDQAY75727.1
FamilyCE2
Sequence Length346
UniProt IDA0A4P6FNF0(100,100)Download
Average pLDDT?93.43
CAZy50 ID118342
CAZy50 RepNo, WCM28978.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1892855
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingosinicellaceae
GenusSphingosinicella
SpeciesSphingosinicella sp. BN140058

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRLHSLASI  LPLLVLVAAS  PAQVRLPVTI  GGRVIAEAGG  SFTFGWPGVY  FEGRFRGTAV60
RVVFDAPAEH  LRLLIDGKVT  RVFRKPGKAD  VVIDRLPSGD  HRIRLEKLTE  SQTGGARFHG120
FFPAAGSKPL  PTRPRKRQIE  FIGDSYTVGY  GNSSATRTCT  PEQIHDTTDT  QQAFGPIVAR180
HFDADYRINA  YSGFGIVRNY  GGSSSGLSLP  TLYPRLKPDD  PAHLEAANAG  WRPQVIVINL240
GTNDFSTPLK  AGEPWADQEA  LRAAYRARYA  AFISDLGRRQ  PQARFILMAS  DKFFSDVEAV300
AASLNKVAGV  KVIQFNGLDL  GGCDWHPSLA  DDLKLASLVQ  QAIGPY346

Predicted 3D structure by AlphaFold2 with pLDDT = 93.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(138-343)

MRRLHSLASI  LPLLVLVAAS  PAQVRLPVTI  GGRVIAEAGG  SFTFGWPGVY  FEGRFRGTAV60
RVVFDAPAEH  LRLLIDGKVT  RVFRKPGKAD  VVIDRLPSGD  HRIRLEKLTE  SQTGGARFHG120
FFPAAGSKPL  PTRPRKRQIE  FIGDSYTVGY  GNSSATRTCT  PEQIHDTTDT  QQAFGPIVAR180
HFDADYRINA  YSGFGIVRNY  GGSSSGLSLP  TLYPRLKPDD  PAHLEAANAG  WRPQVIVINL240
GTNDFSTPLK  AGEPWADQEA  LRAAYRARYA  AFISDLGRRQ  PQARFILMAS  DKFFSDVEAV300
AASLNKVAGV  KVIQFNGLDL  GGCDWHPSLA  DDLKLASLVQ  QAIGPY346

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help