CAZyme3D

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Entry ID

Information for CAZyme ID: QAY68602.1

Basic Information

GenBank IDQAY68602.1
FamilyGH88
Sequence Length379
UniProt IDA0A4P6EZL5(100,100)Download
Average pLDDT?96.37
CAZy50 ID106238
CAZy50 RepNo, AWV33751.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2509456
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus protaetiae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAGSAGKPEW  LEQAWQRTVS  KTMRSSARIG  GGFPHASVNG  RYVLEAPHWW  TAGFWPGLLW60
LVYEESGREE  LRELAEICEN  RLDEVLHEYS  RTDHDLGFMW  TLTSVASYKL  TQSEKSRRRA120
LQAANYLAAR  FNLKGRFIRA  WNPWQEGEDN  SGIAIIDCCM  NMPLLYWAAG  TSGDPRYRHI180
AEAHMETVLA  HFIRPDGSVY  HIVKFDPVTG  ECTDRLGGQG  YAPESAWSRG  TAWALYGLAL240
TSHHTGDRRY  LDAAKRVAHY  FITQLPDDYV  PYWDFRTPPE  VAKYRDSSAG  ACAASGLLLL300
AELAGELEAG  VYRRAGERML  ESLYKHYGAW  DDPEEEGLIL  HGTSHYPEGK  HIDVPLIYGD360
YFFAEGLARL  RGGHRIFWE379

Predicted 3D structure by AlphaFold2 with pLDDT = 96.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(46-370)

MAGSAGKPEW  LEQAWQRTVS  KTMRSSARIG  GGFPHASVNG  RYVLEAPHWW  TAGFWPGLLW60
LVYEESGREE  LRELAEICEN  RLDEVLHEYS  RTDHDLGFMW  TLTSVASYKL  TQSEKSRRRA120
LQAANYLAAR  FNLKGRFIRA  WNPWQEGEDN  SGIAIIDCCM  NMPLLYWAAG  TSGDPRYRHI180
AEAHMETVLA  HFIRPDGSVY  HIVKFDPVTG  ECTDRLGGQG  YAPESAWSRG  TAWALYGLAL240
TSHHTGDRRY  LDAAKRVAHY  FITQLPDDYV  PYWDFRTPPE  VAKYRDSSAG  ACAASGLLLL300
AELAGELEAG  VYRRAGERML  ESLYKHYGAW  DDPEEEGLIL  HGTSHYPEGK  HIDVPLIYGD360
YFFAEGLARL  RGGHRIFWE379

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help