CAZyme3D

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Entry ID

Information for CAZyme ID: QAX80881.1

Basic Information

GenBank IDQAX80881.1
FamilyGH8
Sequence Length375
UniProt IDA0A481QIE0(100,100)Download
Average pLDDT?92.56
CAZy50 ID97690
CAZy50 RepNo, AJR01156.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2339259
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia hibernica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVMFKRLVC  TLLLLASFGA  AAVCDWPAWQ  QFKQYYISEG  GRVIDPSNPR  QITTSEGQSY60
GLFFALVADD  RETFDRLLAW  TENNLSAGDL  TARLPAWLWG  QHREHRWDII  DPNSASDADL120
WIAYSLLEAG  RLWDSRQYQT  MGTLLLQRIA  KEEVVNIPGL  GKMLLPGKIG  FSDNGHWRLN180
PSYLPPQLLT  RFAALAGPWK  EMVDVNQRLW  LETAPHGFSP  DWVVWQEEKG  WQPDETQPNV240
GSYDAIRTYL  WAGMLSNDSP  QKAALIQRFQ  PMAEVTQQQG  VPPEKVDTLT  GKTSGNGPVG300
FSAALLPFLA  SGSTPLNKQA  LSEQQKRVQD  APLGANAYYS  SVLILFGQGW  AQKRYSFNRQ360
GELQPSWNSQ  CATLK375

Predicted 3D structure by AlphaFold2 with pLDDT = 92.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(26-350)

MVVMFKRLVC  TLLLLASFGA  AAVCDWPAWQ  QFKQYYISEG  GRVIDPSNPR  QITTSEGQSY60
GLFFALVADD  RETFDRLLAW  TENNLSAGDL  TARLPAWLWG  QHREHRWDII  DPNSASDADL120
WIAYSLLEAG  RLWDSRQYQT  MGTLLLQRIA  KEEVVNIPGL  GKMLLPGKIG  FSDNGHWRLN180
PSYLPPQLLT  RFAALAGPWK  EMVDVNQRLW  LETAPHGFSP  DWVVWQEEKG  WQPDETQPNV240
GSYDAIRTYL  WAGMLSNDSP  QKAALIQRFQ  PMAEVTQQQG  VPPEKVDTLT  GKTSGNGPVG300
FSAALLPFLA  SGSTPLNKQA  LSEQQKRVQD  APLGANAYYS  SVLILFGQGW  AQKRYSFNRQ360
GELQPSWNSQ  CATLK375

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help