CAZyme3D

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Entry ID

Information for CAZyme ID: QAV29354.1

Basic Information

GenBank IDQAV29354.1
FamilyCBM50
Sequence Length288
UniProt IDA0A410XRK2(100,100)Download
Average pLDDT?77.40
CAZy50 ID119227
CAZy50 RepNo, AWD23841.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1270
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusMicrococcus
SpeciesMicrococcus luteus
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A410XRK2.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDTMTLFTTS  ATRSRRATAS  IVAGMTLAGA  AAVGFSAPAQ  AATVDTWDRL  AECESNGTWD60
INTGNGFYGG  VQFTLSSWQA  VGGEGYPHQA  SKAEQIKRAE  ILQDLQGWGA  WPLCSQKLGL120
TQADADADDV  DVTEAAPVAV  ERTATVQRQS  AADEAAADEA  AAEQAAADQA  AAERWAAKQA180
AAEQAAADKA  AAQRAAAAEK  AAAQRAAAAE  KAAAEQAAAA  EQAVVAEAEA  ETETETETIV240
VKSGDSLWKL  ASEYEVEGGW  TALYEANKGI  VSDAAVIYAG  QELVLPQA288

Predicted 3D structure by AlphaFold2 with pLDDT = 77.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(240-286)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help