CAZyme3D

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Entry ID

Information for CAZyme ID: QAV18083.1

Basic Information

GenBank IDQAV18083.1
FamilyGH88
Sequence Length379
UniProt IDA0A410WUQ2(100,100)Download
Average pLDDT?94.82
CAZy50 ID73185
CAZy50 RepNo, BAD65808.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID79263
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus chitinolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEWYAGRIAG  KAGITVNKEE  LWGSLHKKVN  VMAEKMGNKS  PHVAFDGVYD  DMRIDWWTSG60
FWPGMLWIMH  EMTGDPSFRE  KAWDWDASLE  QCMVSNSNLH  HDVGFQFLPT  AVIKYKLTGD120
ADARRRGIQA  ANFLAGRFNL  AGRFLRAWNQ  DKTGWAIIDS  CMNLSLLFWA  AEEIQDPRFR180
HIAAAHADTV  LEHFIREDGS  VRHIVSFDPE  TGAFLETLGG  QGHSPESGWS  RGQTWALYGM240
ANVYRYTGDI  RYLHAAKRVA  HYFLASLPED  AVPHWDFRTG  NSEGEPRDTS  AAACAASGLL300
EIAKHVAAPE  RELYDRAALR  IMAALAGSYA  SFDDKTEAIL  REGTGNKPAG  QNIDVGLIYG360
DYFLVEAAAK  LNGWQGSIF379

Predicted 3D structure by AlphaFold2 with pLDDT = 94.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH88(51-370)

MEWYAGRIAG  KAGITVNKEE  LWGSLHKKVN  VMAEKMGNKS  PHVAFDGVYD  DMRIDWWTSG60
FWPGMLWIMH  EMTGDPSFRE  KAWDWDASLE  QCMVSNSNLH  HDVGFQFLPT  AVIKYKLTGD120
ADARRRGIQA  ANFLAGRFNL  AGRFLRAWNQ  DKTGWAIIDS  CMNLSLLFWA  AEEIQDPRFR180
HIAAAHADTV  LEHFIREDGS  VRHIVSFDPE  TGAFLETLGG  QGHSPESGWS  RGQTWALYGM240
ANVYRYTGDI  RYLHAAKRVA  HYFLASLPED  AVPHWDFRTG  NSEGEPRDTS  AAACAASGLL300
EIAKHVAAPE  RELYDRAALR  IMAALAGSYA  SFDDKTEAIL  REGTGNKPAG  QNIDVGLIYG360
DYFLVEAAAK  LNGWQGSIF379

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help