CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QAA76346.1

Basic Information

GenBank IDQAA76346.1
FamilyGT4
Sequence Length371
UniProt IDA0A410FTJ2(100,100)Download
Average pLDDT?93.21
CAZy50 ID89911
CAZy50 RepNo, UZJ79670.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2501609
KingdomBacteria
PhylumCandidatus Bipolaricaulota
ClassCandidatus Bipolaricaulia
OrderCandidatus Bipolaricaulales
FamilyCandidatus Bipolaricaulaceae
GenusCandidatus Bipolaricaulis
SpeciesCandidatus Bipolaricaulis sibiricus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGKNVCILTT  VHPPFDTRIF  HKEAKTLVRA  GHDVTLIAQH  DKNEVVDGVQ  IIALPKPKNR60
FTRIFGLAWR  AFRLALRQRA  DIYHFHDPEL  LLAGGLLKML  TRAKVIYDVH  EDVPEQILTK120
HWLPALLRHP  LAVVFNAFEK  FLSRALDAVV  VATEGIAEKF  RGLNPVVIHN  YPDLRMLPDL180
SPVPKEGKEK  TLVYVGGISK  LRGALEMVRA  LEYLDHVDGL  RLDLIGRFEP  PELERELQAL240
PGYRRVRFLG  WLQPPEVYGH  LKEADIGLVC  LHPEPRYVVA  WPVKLFEYMA  AGLPVVASNF300
PLWKEIVGGN  NCGLCVDPLD  PKAIAQAIEY  LLTHPEEARR  MGEHGRQAVR  EKYNWEKESE360
KLLALYAELL  S371

Predicted 3D structure by AlphaFold2 with pLDDT = 93.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(186-343)

MGKNVCILTT  VHPPFDTRIF  HKEAKTLVRA  GHDVTLIAQH  DKNEVVDGVQ  IIALPKPKNR60
FTRIFGLAWR  AFRLALRQRA  DIYHFHDPEL  LLAGGLLKML  TRAKVIYDVH  EDVPEQILTK120
HWLPALLRHP  LAVVFNAFEK  FLSRALDAVV  VATEGIAEKF  RGLNPVVIHN  YPDLRMLPDL180
SPVPKEGKEK  TLVYVGGISK  LRGALEMVRA  LEYLDHVDGL  RLDLIGRFEP  PELERELQAL240
PGYRRVRFLG  WLQPPEVYGH  LKEADIGLVC  LHPEPRYVVA  WPVKLFEYMA  AGLPVVASNF300
PLWKEIVGGN  NCGLCVDPLD  PKAIAQAIEY  LLTHPEEARR  MGEHGRQAVR  EKYNWEKESE360
KLLALYAELL  S371

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help