CAZyme3D

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Entry ID

Information for CAZyme ID: NP_892031.1

Basic Information

GenBank IDNP_892031.1
FamilyGT65
Sequence Length391
UniProt IDQ7YRE7(100,100)Download
Average pLDDT?92.05
CAZy50 ID100839
CAZy50 RepNo, CAH03710.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID9913
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderArtiodactyla
FamilyBovidae
GenusBos
SpeciesBos taurus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGAAAWAPSL  LPPRVSLLLL  LLPLPGLPVG  SWDPAGYLLY  CPCMGRFGNQ  ADHFLGSLAF60
AKLLNRTLAV  PPWIEYQHHK  PPFTNVHVSY  QKYFKLEPLQ  AYHRVISLED  FMEKLAPTHW120
PPEKRVAYCF  EVAAQRSPDK  KTCPMKEGNP  FGPFWDQFHV  SFNKSELFAG  ISFSASYKDQ180
WIQRFSPEEH  PVLALPGAPA  QFPVLEEHRP  LQKYMVWSDE  MVRTGEAQIH  AHLIRPYVGI240
HLRIGSDWKN  ACAMLKDGTA  GAHFMASPQC  VGYSRHTTAP  LTMTMCLPDL  KEIRRALKLW300
VTALNAQSVY  IATDSESYLP  EIQQLFKGKV  KVVSLKPEVA  QIDLYILGQA  DHFIGNCVSS360
FTAFVKRERD  LHGRPSSFFG  MDRPPQLRDE  F391

Predicted 3D structure by AlphaFold2 with pLDDT = 92.05 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT65(38-376)

MGAAAWAPSL  LPPRVSLLLL  LLPLPGLPVG  SWDPAGYLLY  CPCMGRFGNQ  ADHFLGSLAF60
AKLLNRTLAV  PPWIEYQHHK  PPFTNVHVSY  QKYFKLEPLQ  AYHRVISLED  FMEKLAPTHW120
PPEKRVAYCF  EVAAQRSPDK  KTCPMKEGNP  FGPFWDQFHV  SFNKSELFAG  ISFSASYKDQ180
WIQRFSPEEH  PVLALPGAPA  QFPVLEEHRP  LQKYMVWSDE  MVRTGEAQIH  AHLIRPYVGI240
HLRIGSDWKN  ACAMLKDGTA  GAHFMASPQC  VGYSRHTTAP  LTMTMCLPDL  KEIRRALKLW300
VTALNAQSVY  IATDSESYLP  EIQQLFKGKV  KVVSLKPEVA  QIDLYILGQA  DHFIGNCVSS360
FTAFVKRERD  LHGRPSSFFG  MDRPPQLRDE  F391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help