CAZyme3D

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Entry ID

Information for CAZyme ID: NP_498171.1

Basic Information

GenBank IDNP_498171.1
FamilyCBM14
Sequence Length431
UniProt IDQ21650(100,100)Download
Average pLDDT?72.08
CAZy50 ID85264
CAZy50 RepNo, CCD68398.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID6239
KingdomEukaryota
PhylumNematoda
ClassChromadorea
OrderRhabditida
FamilyRhabditidae
GenusCaenorhabditis
SpeciesCaenorhabditis elegans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLLPCLTTL  LLTISTVNSK  FVTDCTNVGD  GMYPLGACEP  RFLACVSGEA  RYMDCPEDLV60
YHKNLEFCDW  RHNVFECGEE  GEENEFSGDG  SGESSGDEEI  TFGDSSGESS  GDELLENVCE120
SLKDGVYSSG  TCSSSYIICN  SGSPRFLSCS  TPLIYDPTNK  KCSWKGMIDE  CSQVSGEYCE180
SDGNISKSEC  SNVFFSCSEG  IAHRRNCPAN  LVFNPAISSC  DWPKNVMDCS  EKSEKPQNCG240
EVDGYFSFGR  CSSSFSACTN  GIPIVMFCPD  GLMFSEKNQM  CDYEWNVDEC  DLESSGFMEN300
YKASEALTPC  TNMDNGLYAL  DCTPRVLSCQ  NGRENIFECP  PSLVFNENSL  ICDYPETSLK360
CCMEDALLIR  DASIGTYDCS  IDGLFSSTLC  SRNYHKCSNG  QLIPHECADS  NAVFSASAAK420
CVDSSLLEQC  Q431

Predicted 3D structure by AlphaFold2 with pLDDT = 72.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM14(25-77)+CBM14(119-165)+CBM14(187-229)+CBM14(249-290)+CBM14(310-361)+CBM14(388-423)

MRLLPCLTTL  LLTISTVNSK  FVTDCTNVGD  GMYPLGACEP  RFLACVSGEA  RYMDCPEDLV60
YHKNLEFCDW  RHNVFECGEE  GEENEFSGDG  SGESSGDEEI  TFGDSSGESS  GDELLENVCE120
SLKDGVYSSG  TCSSSYIICN  SGSPRFLSCS  TPLIYDPTNK  KCSWKGMIDE  CSQVSGEYCE180
SDGNISKSEC  SNVFFSCSEG  IAHRRNCPAN  LVFNPAISSC  DWPKNVMDCS  EKSEKPQNCG240
EVDGYFSFGR  CSSSFSACTN  GIPIVMFCPD  GLMFSEKNQM  CDYEWNVDEC  DLESSGFMEN300
YKASEALTPC  TNMDNGLYAL  DCTPRVLSCQ  NGRENIFECP  PSLVFNENSL  ICDYPETSLK360
CCMEDALLIR  DASIGTYDCS  IDGLFSSTLC  SRNYHKCSNG  QLIPHECADS  NAVFSASAAK420
CVDSSLLEQC  Q431

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help