CAZyme3D

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Entry ID

Information for CAZyme ID: NP_176072.3

Basic Information

GenBank IDNP_176072.3
FamilyCE13
Sequence Length444
UniProt IDF4I839(100,100)Download
Average pLDDT?86.07
CAZy50 ID14102
CAZy50 RepNo, CAE5960459.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLSHSRSPY  KPRYVIKSKT  SMIKKCKMKK  LLWSWIILFN  IHVNGMMMEF  DEMEWFTVFN60
GTKVFQTQND  VFSEAKFPMV  GLTLIQSAAA  KGAVCLDGSL  PGYHLHRGFG  SGANNWLVQL120
EGGGWCDTIR  NCVYRKTTRR  GSSSYMEKEI  PFTGILSDKA  ADNPDFYNWN  RVKVRYCDGG180
SFSGDSENKA  AQLQFRGKRI  WLAAMEDLMA  KGMRQAKQAL  LSGCSAGGLA  VILRCDDFGK240
LFPPSTRVKC  LSDAGFFLDA  IDVSGGRSLR  RLYAGVVRLQ  NLQTNLPQYC  VNRLNPTSCF300
FPQNLINQVK  TPLFILNAAY  DSWQIQESLA  PKSADPSGSW  NDCRLNYAKC  SASQIQFLQG360
FRTRMVNLVK  GFAMPSKNGV  FLNSCFAHCQ  TERHDTWFAQ  NSPAIKNKGI  AVAVGDWYFE420
RGGAKLIDCA  YPCDKTCHNL  VFRR444

Predicted 3D structure by AlphaFold2 with pLDDT = 86.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE13(79-424)

MLLSHSRSPY  KPRYVIKSKT  SMIKKCKMKK  LLWSWIILFN  IHVNGMMMEF  DEMEWFTVFN60
GTKVFQTQND  VFSEAKFPMV  GLTLIQSAAA  KGAVCLDGSL  PGYHLHRGFG  SGANNWLVQL120
EGGGWCDTIR  NCVYRKTTRR  GSSSYMEKEI  PFTGILSDKA  ADNPDFYNWN  RVKVRYCDGG180
SFSGDSENKA  AQLQFRGKRI  WLAAMEDLMA  KGMRQAKQAL  LSGCSAGGLA  VILRCDDFGK240
LFPPSTRVKC  LSDAGFFLDA  IDVSGGRSLR  RLYAGVVRLQ  NLQTNLPQYC  VNRLNPTSCF300
FPQNLINQVK  TPLFILNAAY  DSWQIQESLA  PKSADPSGSW  NDCRLNYAKC  SASQIQFLQG360
FRTRMVNLVK  GFAMPSKNGV  FLNSCFAHCQ  TERHDTWFAQ  NSPAIKNKGI  AVAVGDWYFE420
RGGAKLIDCA  YPCDKTCHNL  VFRR444

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help