CAZyme3D

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Entry ID

Information for CAZyme ID: NP_014966.1

Basic Information

GenBank IDNP_014966.1
FamilyGT39
Sequence Length753
UniProt IDP47190(100,100)Download
Average pLDDT?89.32
CAZy50 ID17639
CAZy50 RepNo, QWW24041.1
Structure Cluster-
EC Number(s)2.4.1.109
Substrates(s)-

Taxonomy

Tax ID559292
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilySaccharomycetaceae
GenusSaccharomyces
SpeciesSaccharomyces cerevisiae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPYRVATGYS  EKSTDDDLIW  RTPIVKEELE  DADNFLKDDA  ELYDKVKNES  AVSHLDTIVM60
PIIFTVLGMF  TRMYKIGRNN  HVVWDEAHFG  KFGSYYLRHE  FYHDVHPPLG  KMLVGLSGYL120
AGYNGSWDFP  SGEVYPDYID  YVKMRLFQAM  FSSLCVPLAY  FTGRAIGFSR  LSVWLFTILV180
IFENSYATLG  KFILLDSMLL  FFTVSSYFCL  AKFHTMRKSP  FSARWWLWLC  LTGLNLGCAI240
SVKMVGLFII  SVVGIYTISE  LWNLLSDRSV  SWKVYVNHWL  ARIFGLIIIP  VCVFLLCFKI300
HFDLLSNSGP  GDSTMPSLFQ  ASLNGTKVGK  GPRDVALGSS  IISIKNQALG  GALLHSHVQP360
FPEGSEQQQV  TVYGYSDANN  EWFFQRIRGV  EPWTDAENKT  IEFVKGGEMY  RLMHRLTGKN420
LHTHEVPAPI  SKSEYEVSAY  GDVDLGDYKD  NWIIEIVEQV  GEEDPTLLHP  LSTSFRIKNS480
ILGCYLAQSG  KHLPEWGFRQ  GEVVCLKHAS  KRDKRTWWNI  ETHENERLPQ  GEDFVYPKTS540
FFRNFMQLNS  AMMATNNALV  PNPEKFDGIA  SSAWQWPTLN  VGVRLCEWSE  KSIKYFLLGS600
PASVWPSSIA  VCALIIHVIF  LTLKWQRQCV  ILSDPVERDV  FVMAAFYPLL  AWLLHYMPFV660
VMSRVVYAHH  YLPTLYFALM  ILSYYFDMIT  KRWATRNTGK  FLRLGAYIVY  GSIVIAGFFY720
FSPFSFGMDG  PVDDYAYLAW  LPTWQIVEDI  RNT753

Predicted 3D structure by AlphaFold2 with pLDDT = 89.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT39(64-302)

MPYRVATGYS  EKSTDDDLIW  RTPIVKEELE  DADNFLKDDA  ELYDKVKNES  AVSHLDTIVM60
PIIFTVLGMF  TRMYKIGRNN  HVVWDEAHFG  KFGSYYLRHE  FYHDVHPPLG  KMLVGLSGYL120
AGYNGSWDFP  SGEVYPDYID  YVKMRLFQAM  FSSLCVPLAY  FTGRAIGFSR  LSVWLFTILV180
IFENSYATLG  KFILLDSMLL  FFTVSSYFCL  AKFHTMRKSP  FSARWWLWLC  LTGLNLGCAI240
SVKMVGLFII  SVVGIYTISE  LWNLLSDRSV  SWKVYVNHWL  ARIFGLIIIP  VCVFLLCFKI300
HFDLLSNSGP  GDSTMPSLFQ  ASLNGTKVGK  GPRDVALGSS  IISIKNQALG  GALLHSHVQP360
FPEGSEQQQV  TVYGYSDANN  EWFFQRIRGV  EPWTDAENKT  IEFVKGGEMY  RLMHRLTGKN420
LHTHEVPAPI  SKSEYEVSAY  GDVDLGDYKD  NWIIEIVEQV  GEEDPTLLHP  LSTSFRIKNS480
ILGCYLAQSG  KHLPEWGFRQ  GEVVCLKHAS  KRDKRTWWNI  ETHENERLPQ  GEDFVYPKTS540
FFRNFMQLNS  AMMATNNALV  PNPEKFDGIA  SSAWQWPTLN  VGVRLCEWSE  KSIKYFLLGS600
PASVWPSSIA  VCALIIHVIF  LTLKWQRQCV  ILSDPVERDV  FVMAAFYPLL  AWLLHYMPFV660
VMSRVVYAHH  YLPTLYFALM  ILSYYFDMIT  KRWATRNTGK  FLRLGAYIVY  GSIVIAGFFY720
FSPFSFGMDG  PVDDYAYLAW  LPTWQIVEDI  RNT753

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help

qseqidqlensseqidpidentevaluelengthqstartqendqcovhspscovhsp
NP_014966.1753QWW24041.156.95.88e-3057144074393.576.7