CAZyme3D

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Entry ID

Information for CAZyme ID: ELP35546.1

Basic Information

GenBank IDELP35546.1
FamilyGH174
Sequence Length1171
UniProt IDL7CR53(100,100)Download
Average pLDDT?89.74
CAZy50 ID8174
CAZy50 RepNo, EMB13744.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID993516
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusRhodopirellula
SpeciesRhodopirellula baltica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLALMAALC  GADPASAQPK  ETLPALAEGR  APENFKEMWR  GFNPRREPLN  VEVVKEWEED60
DVDLKIVRFR  IGVFKGHEAK  LAAVYGAPKS  ATNLPGLVQI  HGGGQYADHQ  ACVANAKRGY120
ATISIAWAGR  ISAPGHRVSP  DEVKLFWDQK  TDDPAYRLTT  DWGVVDGYHA  PSRNRGNQFP180
SAKPAEWTLD  AVESPRNSGW  FLCAMAARRA  LTFLESQPEV  DSERLGVYGH  SMGGKLTVLT240
AADSRVKAAA  PSCGGISDRY  NDSELFRKTL  GDDVSLREIQ  CPIIFLSPAN  DFHGRIGDLP300
SAISEIQSNE  WRVTCSPHHN  HQDTPAYEAA  TLLWFDQHLK  NAFQFPKSPR  LTMDWDVADG360
VPKAKVQVDE  SMPIESVDVY  YTQNGKPGET  PADRDDVVHR  FWHHASADQS  GDAWTAKMPI420
SSVSKPLWVY  ANVTYRLPES  VEGVGYYYRT  YRTDEVNLSS  VVQMFDAEQL  VTKDIKATKQ480
RTTLIEDFAG  DWEHEWFTYR  PEQWARTTNK  FSADQYKAPA  EAKLVLEVQS  GQANSLVVMI540
DGHAAAIELV  GGQTWQTITL  SPDDFENAAG  ESLAHWDGIR  QLKLSDAERL  SSGRGESAHS600
RIVGRRWKGE  PPQFRNLRWT  TQTVRSTEPR  LDVFPAPTVG  VNSINGATHF  QTEYSPSPSV660
WDDRIDEAAV  FQVEMQHQQS  PADSFQLRMG  KGGQIYSLRG  SFGESLPPSW  RKPGGKLSPW720
NDEVWQFVAV  CTQYNGIKTL  RANRRQSEQD  SSQVEAVKNQ  LSELGLSDTF  FVHNSGAYIP780
NSSELKSLYC  PLLAYEIDED  ARAIRMLNWG  LVPQIRSVHR  SPLLYYTQIR  DAGDGVIEMT840
WVVHNFSQRE  DVVFDHLNAP  WGGTRISSLP  LRYVASPEGE  LLEREGFLSE  HGTVNVRETA900
GWNLSCQSDA  DDSPSLALVY  GRDKHLEREL  ERKANGEAYC  QFKHSLYRDW  RANEPLYKTE960
WKDWATRPEN  SFRNYDVCEI  IPKLRIVPGS  TIWFRSYLVV  GEKAQAMQRA  QSLVDHVDYG1020
LLDFDADQCP  MTTVVRDGVS  MQLFAKPVPR  SLPVFEIEHV  KTGQNVLTTD  PYFFVENQSL1080
DLDLPSQHPQ  RDYFASVRGY  FLDRNHSKWK  RLVGYAMAER  PAENASNTSG  NWKRLSRVLK1140
SQVAAEDNKY  HRDVWVQYSD  SASPVETRAT  E1171

Predicted 3D structure by AlphaFold2 with pLDDT = 89.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLLALMAALC  GADPASAQPK  ETLPALAEGR  APENFKEMWR  GFNPRREPLN  VEVVKEWEED60
DVDLKIVRFR  IGVFKGHEAK  LAAVYGAPKS  ATNLPGLVQI  HGGGQYADHQ  ACVANAKRGY120
ATISIAWAGR  ISAPGHRVSP  DEVKLFWDQK  TDDPAYRLTT  DWGVVDGYHA  PSRNRGNQFP180
SAKPAEWTLD  AVESPRNSGW  FLCAMAARRA  LTFLESQPEV  DSERLGVYGH  SMGGKLTVLT240
AADSRVKAAA  PSCGGISDRY  NDSELFRKTL  GDDVSLREIQ  CPIIFLSPAN  DFHGRIGDLP300
SAISEIQSNE  WRVTCSPHHN  HQDTPAYEAA  TLLWFDQHLK  NAFQFPKSPR  LTMDWDVADG360
VPKAKVQVDE  SMPIESVDVY  YTQNGKPGET  PADRDDVVHR  FWHHASADQS  GDAWTAKMPI420
SSVSKPLWVY  ANVTYRLPES  VEGVGYYYRT  YRTDEVNLSS  VVQMFDAEQL  VTKDIKATKQ480
RTTLIEDFAG  DWEHEWFTYR  PEQWARTTNK  FSADQYKAPA  EAKLVLEVQS  GQANSLVVMI540
DGHAAAIELV  GGQTWQTITL  SPDDFENAAG  ESLAHWDGIR  QLKLSDAERL  SSGRGESAHS600
RIVGRRWKGE  PPQFRNLRWT  TQTVRSTEPR  LDVFPAPTVG  VNSINGATHF  QTEYSPSPSV660
WDDRIDEAAV  FQVEMQHQQS  PADSFQLRMG  KGGQIYSLRG  SFGESLPPSW  RKPGGKLSPW720
NDEVWQFVAV  CTQYNGIKTL  RANRRQSEQD  SSQVEAVKNQ  LSELGLSDTF  FVHNSGAYIP780
NSSELKSLYC  PLLAYEIDED  ARAIRMLNWG  LVPQIRSVHR  SPLLYYTQIR  DAGDGVIEMT840
WVVHNFSQRE  DVVFDHLNAP  WGGTRISSLP  LRYVASPEGE  LLEREGFLSE  HGTVNVRETA900
GWNLSCQSDA  DDSPSLALVY  GRDKHLEREL  ERKANGEAYC  QFKHSLYRDW  RANEPLYKTE960
WKDWATRPEN  SFRNYDVCEI  IPKLRIVPGS  TIWFRSYLVV  GEKAQAMQRA  QSLVDHVDYG1020
LLDFDADQCP  MTTVVRDGVS  MQLFAKPVPR  SLPVFEIEHV  KTGQNVLTTD  PYFFVENQSL1080
DLDLPSQHPQ  RDYFASVRGY  FLDRNHSKWK  RLVGYAMAER  PAENASNTSG  NWKRLSRVLK1140
SQVAAEDNKY  HRDVWVQYSD  SASPVETRAT  E1171

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help