CAZyme3D

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Entry ID

Information for CAZyme ID: EGB13928.1

Basic Information

GenBank IDEGB13928.1
FamilyGT2
Sequence Length301
UniProt IDF0JGQ9(100,100)Download
Average pLDDT?90.46
CAZy50 ID104886
CAZy50 RepNo, SOB57039.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID641491
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio mercurii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKHTVSIIV  SDLETHPGLP  RLLQSVSRQS  EGLDRAEIVV  AGNGGHDPSS  ETLWRAVTGL60
DAVRLETFEP  GVTPSRARNL  AAAKSIGDRL  VFLRPDHRLD  PKYLTTADAV  FADHPETDVM120
YADYIRLAPG  RSQSPGPAMI  QLPPFRDGLL  QARGFLGPGV  LITRQAFERT  EGFRDNTFYR180
DWDLWVQTAQ  AGGNFYHVGY  PLTSCEHRKV  SFRERAEDGR  CKAMLVINNQ  AFFPDHTVRW240
ALAYLRGDAW  AEAFGFMTIP  GPMDVTRMLH  DHAMKTMGTD  TLAEEAIRQF  DKAVINSTTL300
L301

Predicted 3D structure by AlphaFold2 with pLDDT = 90.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(5-208)

MRKHTVSIIV  SDLETHPGLP  RLLQSVSRQS  EGLDRAEIVV  AGNGGHDPSS  ETLWRAVTGL60
DAVRLETFEP  GVTPSRARNL  AAAKSIGDRL  VFLRPDHRLD  PKYLTTADAV  FADHPETDVM120
YADYIRLAPG  RSQSPGPAMI  QLPPFRDGLL  QARGFLGPGV  LITRQAFERT  EGFRDNTFYR180
DWDLWVQTAQ  AGGNFYHVGY  PLTSCEHRKV  SFRERAEDGR  CKAMLVINNQ  AFFPDHTVRW240
ALAYLRGDAW  AEAFGFMTIP  GPMDVTRMLH  DHAMKTMGTD  TLAEEAIRQF  DKAVINSTTL300
L301

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help