CAZyme3D

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Entry ID

Information for CAZyme ID: EFI04726.1

Basic Information

GenBank IDEFI04726.1
FamilyGH139
Sequence Length766
UniProt IDD7IDM2(100,100)Download
Average pLDDT?93.55
CAZy50 ID26987
CAZy50 RepNo, CDE76830.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID469585
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. 1_1_14

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPCGGGDIGM  NIWVEEGDIL  FYLSRSGTFD  ENNCQLKQGR  FRLRLSPNPF  GDAKDFRQEL60
KLNDGYVEIS  AGGTQVQLWA  DVFHPVVHIE  VVNDRPLQAE  IFYENWRYQD  RLIRKGEGQQ120
CSYKWAPPKG  TVTYADFISL  ENLSEKDSKR  LLFYHRNAEE  TVFDIAVAQQ  GMNEVKSQMM180
NPLKNLTFGG  YLSGENLEYT  GTSDSVYAGT  DYRTWGFRSL  KASKKHHFSV  VLHTEQTETV240
TQWEQGLKTA  WQRIAPQGKI  SSKVVSQDKK  QTRLWWNAFW  QRSFIETIGE  TENKENSKVE300
KEAGNKEKSD  AKDALKEITR  NYTLFRYMLG  CNAYGSVPTK  FNGGLFTFDP  CHIDEKQAFT360
PDYRKWGGGT  MTAQNQRLVY  WPMLKSGDFD  MMPSQFNFYN  RMLKNAELRS  RVYWQHEGAC420
FSEQIENFGL  PNPAEYGFKR  PDWFDKGLEY  NAWLEYEWDT  ILEFCQMILE  TKNYADADIT480
PYLPLIESSL  TFFDEHYRLL  ASRRGRKALD  GDGHLILFPG  SACETYKMTN  NASSTIAALR540
TVLETYIKIC  NNEKWQKMLE  TIPPVPLRYI  EVKDSLNRQT  STMIPVWKQT  ISPAKSWERI600
NNIETPQLYP  VFPWRIYGVG  KENLEIARDT  YFYDPDALKF  RSHTGWKQDN  IWAACLGLTE660
EAKSLSLAKL  SDGPHRFPAF  WGPGYDWTPD  HNWGGSGMIG  LQEMLLQTNG  AQILLFPAWP720
KEWNVHFKLH  APGNTTVEAT  LKDGKVTDLK  VSPENRKKDI  IIMIEK766

Predicted 3D structure by AlphaFold2 with pLDDT = 93.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH139(1-765)

MPCGGGDIGM  NIWVEEGDIL  FYLSRSGTFD  ENNCQLKQGR  FRLRLSPNPF  GDAKDFRQEL60
KLNDGYVEIS  AGGTQVQLWA  DVFHPVVHIE  VVNDRPLQAE  IFYENWRYQD  RLIRKGEGQQ120
CSYKWAPPKG  TVTYADFISL  ENLSEKDSKR  LLFYHRNAEE  TVFDIAVAQQ  GMNEVKSQMM180
NPLKNLTFGG  YLSGENLEYT  GTSDSVYAGT  DYRTWGFRSL  KASKKHHFSV  VLHTEQTETV240
TQWEQGLKTA  WQRIAPQGKI  SSKVVSQDKK  QTRLWWNAFW  QRSFIETIGE  TENKENSKVE300
KEAGNKEKSD  AKDALKEITR  NYTLFRYMLG  CNAYGSVPTK  FNGGLFTFDP  CHIDEKQAFT360
PDYRKWGGGT  MTAQNQRLVY  WPMLKSGDFD  MMPSQFNFYN  RMLKNAELRS  RVYWQHEGAC420
FSEQIENFGL  PNPAEYGFKR  PDWFDKGLEY  NAWLEYEWDT  ILEFCQMILE  TKNYADADIT480
PYLPLIESSL  TFFDEHYRLL  ASRRGRKALD  GDGHLILFPG  SACETYKMTN  NASSTIAALR540
TVLETYIKIC  NNEKWQKMLE  TIPPVPLRYI  EVKDSLNRQT  STMIPVWKQT  ISPAKSWERI600
NNIETPQLYP  VFPWRIYGVG  KENLEIARDT  YFYDPDALKF  RSHTGWKQDN  IWAACLGLTE660
EAKSLSLAKL  SDGPHRFPAF  WGPGYDWTPD  HNWGGSGMIG  LQEMLLQTNG  AQILLFPAWP720
KEWNVHFKLH  APGNTTVEAT  LKDGKVTDLK  VSPENRKKDI  IIMIEK766

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help