CAZyme3D

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Entry ID

Information for CAZyme ID: CUQ67682.1

Basic Information

GenBank IDCUQ67682.1
FamilyGH133
Sequence Length663
UniProt IDA0A0S4L0X7(100,100)Download
Average pLDDT?94.74
CAZy50 ID42574
CAZy50 RepNo, ALA57429.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1715989
KingdomBacteria
PhylumNitrospirota
ClassNitrospiria
OrderNitrospirales
FamilyNitrospiraceae
GenusNitrospira
SpeciesCandidatus Nitrospira inopinata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRNRKQQEV  TIDATTCQDL  DRALRLEWLE  TNGRGGFASG  TVAGANTRRY  HALLLIARRP60
PIERFVLVNH  LEEWVDLNGH  PVPLSTNLYP  GAVHPTGYAF  CTGFSSDPWP  TWTYECGPVS120
IQREILCVHG  RDLVLVRWTL  LAGAQQSAVL  RIRPMVSGRD  YHHTHHENPA  LSTTVSEGNG180
WVSWRPYPDV  PAVRAFYDGT  YQHGPDWFRH  VQFPVERERG  LDHEEDWWSP  GEFEFTVTPE240
RPQTLILTTE  QSDSLDPILL  LRQEKERRAN  LTEQAARFDH  LTSHLWRASQ  AFIVERGTGH300
TVIAGYPWFT  DWGRDTFISL  PGLCLVTGRH  DQAWHIIESY  ATHVAEGLIP  NRFPDAGDTP360
EYNSIDASLW  FIDAVDRYLA  SSNDEARVRT  IAWPAVKQIL  DGYRLGTRYQ  IHRDRDGLIA420
GGMPGAQLTW  MDAKVGDWVV  TPRHGKPVEI  QALWMRSLDV  GRRLAERFGE  PAYAARCRRE480
RELAVNSFRQ  KFWYEAGGYL  YDVVDGPEGS  DPSIRPNQLY  VLALCPDVIP  NEQAKRILNV540
VTDHLLTPIG  LRTLSPADPR  YRSRCAGGVV  ERDGAYHQGT  VWPFLLGPFV  TAWLNVFGRS600
AKSKAKARSF  LKGLEAHLHA  ACVGQVSEIF  DGDPPHDPRG  CPAQAWSVAE  PLRVLIEELG660
RRR663

Predicted 3D structure by AlphaFold2 with pLDDT = 94.74 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(298-653)

MNRNRKQQEV  TIDATTCQDL  DRALRLEWLE  TNGRGGFASG  TVAGANTRRY  HALLLIARRP60
PIERFVLVNH  LEEWVDLNGH  PVPLSTNLYP  GAVHPTGYAF  CTGFSSDPWP  TWTYECGPVS120
IQREILCVHG  RDLVLVRWTL  LAGAQQSAVL  RIRPMVSGRD  YHHTHHENPA  LSTTVSEGNG180
WVSWRPYPDV  PAVRAFYDGT  YQHGPDWFRH  VQFPVERERG  LDHEEDWWSP  GEFEFTVTPE240
RPQTLILTTE  QSDSLDPILL  LRQEKERRAN  LTEQAARFDH  LTSHLWRASQ  AFIVERGTGH300
TVIAGYPWFT  DWGRDTFISL  PGLCLVTGRH  DQAWHIIESY  ATHVAEGLIP  NRFPDAGDTP360
EYNSIDASLW  FIDAVDRYLA  SSNDEARVRT  IAWPAVKQIL  DGYRLGTRYQ  IHRDRDGLIA420
GGMPGAQLTW  MDAKVGDWVV  TPRHGKPVEI  QALWMRSLDV  GRRLAERFGE  PAYAARCRRE480
RELAVNSFRQ  KFWYEAGGYL  YDVVDGPEGS  DPSIRPNQLY  VLALCPDVIP  NEQAKRILNV540
VTDHLLTPIG  LRTLSPADPR  YRSRCAGGVV  ERDGAYHQGT  VWPFLLGPFV  TAWLNVFGRS600
AKSKAKARSF  LKGLEAHLHA  ACVGQVSEIF  DGDPPHDPRG  CPAQAWSVAE  PLRVLIEELG660
RRR663

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help