CAZyme3D

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Entry ID

Information for CAZyme ID: CTQ95280.1

Basic Information

GenBank IDCTQ95280.1
FamilyCBM87
Sequence Length682
UniProt IDA0A0K3BHA2(100,100)Download
Average pLDDT?91.02
CAZy50 ID32338
CAZy50 RepNo, QFZ20224.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID703222
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusKibdelosporangium
SpeciesKibdelosporangium sp. MJ126-NF4

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNPRRLGRTL  PVPLLIVVAL  GLVAFTLASP  SGLEAPHDTG  ASTQPALPEQ  PPLPRKQRVP60
IRAQNADTGP  GTRVALRQLV  VATDADDFGL  AAWKSVLDGI  GTPYDVLLAR  TERVDSARLV120
RPDGVGRYSA  ILLTNNALLY  PNNGSYVAAF  DAQEWNALWD  YERAFQVRQV  SLNTFPGQSP180
EDYCLRPVRE  GSVGTTPELA  AVTGMGSQVF  DYLATDAKIP  IVQSYLYRAK  LGCAAEPVLT240
VGADVVGVVS  AQDGRERAAL  TFSVGPDAVS  TKLLGFGLVR  WATRGVFLGE  QRHWFGVDVD300
DWFSSTLRMR  PDGTKDVYRL  TGSEAAQVVD  QQRKARRDHP  LAKDFTLNLP  YNASKFDARA360
PATCSQDTTE  PLSSYTKCLA  GEFRWINHTS  THPQMNDTSY  ERSNTEIRRN  LTDAALGGLP420
VPHSVLKTPE  YSGLGVYNPD  PESPDPPTDH  GLAGSNKEML  RAARDLGVKY  VQGNMSFAGH480
RPPCFNCGIH  HPLQPDVFVV  PDWPTNIAFE  AVTPDEQKAL  YNAEYGEHTY  EAIVSGEAEV540
ALQHVMSGSA  YVHTLHQGNL  HQYGQGKSLA  FDWIDAVLAG  YSSYYRVPLK  NTDWVTLGDY600
VEQRTSHFAH  LAEDAVFNRV  TNAVTYTPKT  NGSLFVTGIQ  TREATEEDQK  GPDDAEIYGT660
DAVSRLGVTG  GQSITVTASQ  RP682

Predicted 3D structure by AlphaFold2 with pLDDT = 91.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM87(94-292)

MNPRRLGRTL  PVPLLIVVAL  GLVAFTLASP  SGLEAPHDTG  ASTQPALPEQ  PPLPRKQRVP60
IRAQNADTGP  GTRVALRQLV  VATDADDFGL  AAWKSVLDGI  GTPYDVLLAR  TERVDSARLV120
RPDGVGRYSA  ILLTNNALLY  PNNGSYVAAF  DAQEWNALWD  YERAFQVRQV  SLNTFPGQSP180
EDYCLRPVRE  GSVGTTPELA  AVTGMGSQVF  DYLATDAKIP  IVQSYLYRAK  LGCAAEPVLT240
VGADVVGVVS  AQDGRERAAL  TFSVGPDAVS  TKLLGFGLVR  WATRGVFLGE  QRHWFGVDVD300
DWFSSTLRMR  PDGTKDVYRL  TGSEAAQVVD  QQRKARRDHP  LAKDFTLNLP  YNASKFDARA360
PATCSQDTTE  PLSSYTKCLA  GEFRWINHTS  THPQMNDTSY  ERSNTEIRRN  LTDAALGGLP420
VPHSVLKTPE  YSGLGVYNPD  PESPDPPTDH  GLAGSNKEML  RAARDLGVKY  VQGNMSFAGH480
RPPCFNCGIH  HPLQPDVFVV  PDWPTNIAFE  AVTPDEQKAL  YNAEYGEHTY  EAIVSGEAEV540
ALQHVMSGSA  YVHTLHQGNL  HQYGQGKSLA  FDWIDAVLAG  YSSYYRVPLK  NTDWVTLGDY600
VEQRTSHFAH  LAEDAVFNRV  TNAVTYTPKT  NGSLFVTGIQ  TREATEEDQK  GPDDAEIYGT660
DAVSRLGVTG  GQSITVTASQ  RP682

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help