CAZyme3D

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Entry ID

Information for CAZyme ID: CTQ90187.1

Basic Information

GenBank IDCTQ90187.1
FamilyGH18
Sequence Length467
UniProt IDA0A0K3AZL6(100,100)Download
Average pLDDT?91.76
CAZy50 ID22320
CAZy50 RepNo, AHI01878.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID703222
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusKibdelosporangium
SpeciesKibdelosporangium sp. MJ126-NF4

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFSGHKRHL  ALTAALVVAA  AGLSPSATAG  ASPPPAEAAA  AYHVVNYYPQ  WAVYGRNVYL60
GDIERNGSAN  GLTVLNYAFA  NIHATNKTCF  ANTSSVGNPG  DPDYPKDNAG  DAHADYQRVI120
TAAQSVDGRA  DDPAAKLRGN  FNQLKKLKAK  HPGMKILMSI  GGWSFSKYFA  DVAATPAARK180
KFVTSCVDLF  IKGNLPSRDD  WGTGKPAGGP  GTGANIFDGF  DLDWEYPGGG  GLEGNHVDPN240
DKANFTLLLQ  EFRTQLNAVR  PGMLLTAFTA  SDPAKIKNGL  ELDKIFNYLD  FANLQGYDFH300
GSSWEPNRTG  HQAGLHEDPA  DPNPPESRFS  VEQAVKIYRD  AGVPPTKIVV  GIPFYGRGWT360
GVEDGGVHGA  YQSATGPAEG  DFPEEPGVRG  YRNLKKQLDP  SQIHHDDTTI  ATWGYDGTEF420
WSFDDASTIA  KKTAYIKEQG  LGGAFAWNLA  EDDGTLSAAM  RTGLGRR467

Predicted 3D structure by AlphaFold2 with pLDDT = 91.76 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(41-456)

MRFSGHKRHL  ALTAALVVAA  AGLSPSATAG  ASPPPAEAAA  AYHVVNYYPQ  WAVYGRNVYL60
GDIERNGSAN  GLTVLNYAFA  NIHATNKTCF  ANTSSVGNPG  DPDYPKDNAG  DAHADYQRVI120
TAAQSVDGRA  DDPAAKLRGN  FNQLKKLKAK  HPGMKILMSI  GGWSFSKYFA  DVAATPAARK180
KFVTSCVDLF  IKGNLPSRDD  WGTGKPAGGP  GTGANIFDGF  DLDWEYPGGG  GLEGNHVDPN240
DKANFTLLLQ  EFRTQLNAVR  PGMLLTAFTA  SDPAKIKNGL  ELDKIFNYLD  FANLQGYDFH300
GSSWEPNRTG  HQAGLHEDPA  DPNPPESRFS  VEQAVKIYRD  AGVPPTKIVV  GIPFYGRGWT360
GVEDGGVHGA  YQSATGPAEG  DFPEEPGVRG  YRNLKKQLDP  SQIHHDDTTI  ATWGYDGTEF420
WSFDDASTIA  KKTAYIKEQG  LGGAFAWNLA  EDDGTLSAAM  RTGLGRR467

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help