CAZyme3D

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Entry ID

Information for CAZyme ID: CRZ34777.1

Basic Information

GenBank IDCRZ34777.1
FamilyCBM36, GH11
Sequence Length402
UniProt IDA0A0H5SGZ4(100,100)Download
Average pLDDT?84.04
CAZy50 ID28703
CAZy50 RepNo, AMO13186.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1564487
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix hemicellulosilytica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLQIFNAMFP  LSKKVRSVVS  ALPVKWCIGL  GLKGGKIMRK  RKVKLFLSLM  LTMILLMPAM60
SVQAAQTIYN  NETGIHDGYH  YELWKDYGNT  SMTLNSGGTF  SCQWSNIGNA  LFRKGRKFDE120
TQTHQQIGNI  TVTYGCDYQP  NGNSYLCVYG  WTVDPLVEYY  IVDSWGNWRP  PGASSKGTIT180
VDGGTYDIYE  TTRYNQPSIR  GTQTFQQYWS  VRTSKRTSGT  ISVTQHFNAW  ENRGMRLGKM240
YEVALTVEGY  QSSGSANVYS  HTLTIGGSGT  NPNPTPTPNP  GGNPTRIECE  NMTISGPYAG300
VINYPFNGVA  LYANNDKVSF  NQYFASGTHN  FSLRGCSNNS  NMARVDLYIG  GQYKGTFYYG360
GSYPAVYTIN  NVSHGTGNQT  VELILTADNG  TWDAYIDYLE  IN402

Predicted 3D structure by AlphaFold2 with pLDDT = 84.04 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH11(77-258)+CBM36(288-401)

MLQIFNAMFP  LSKKVRSVVS  ALPVKWCIGL  GLKGGKIMRK  RKVKLFLSLM  LTMILLMPAM60
SVQAAQTIYN  NETGIHDGYH  YELWKDYGNT  SMTLNSGGTF  SCQWSNIGNA  LFRKGRKFDE120
TQTHQQIGNI  TVTYGCDYQP  NGNSYLCVYG  WTVDPLVEYY  IVDSWGNWRP  PGASSKGTIT180
VDGGTYDIYE  TTRYNQPSIR  GTQTFQQYWS  VRTSKRTSGT  ISVTQHFNAW  ENRGMRLGKM240
YEVALTVEGY  QSSGSANVYS  HTLTIGGSGT  NPNPTPTPNP  GGNPTRIECE  NMTISGPYAG300
VINYPFNGVA  LYANNDKVSF  NQYFASGTHN  FSLRGCSNNS  NMARVDLYIG  GQYKGTFYYG360
GSYPAVYTIN  NVSHGTGNQT  VELILTADNG  TWDAYIDYLE  IN402

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help