CAZyme3D

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Entry ID

Information for CAZyme ID: CRI44157.1

Basic Information

GenBank IDCRI44157.1
FamilyGT28
Sequence Length357
UniProt IDA0A0F7WNK6(100,100)Download
Average pLDDT?91.27
CAZy50 ID127051
CAZy50 RepNo, AQT77834.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID83558
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderChlamydiales
FamilyChlamydiaceae
GenusChlamydia
SpeciesChlamydia pneumoniae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMKKIRKVAL  AVGGSGGHIV  PALSVKEAFS  REGIDVLLLG  KGLKNHPSLQ  QGISYREIPS60
GLPTVLNPIK  IMSRTLSLCS  GYLKARKELK  IFDPDLVIGF  GSYHSLPVLL  AGLSHKIPLF120
LHEQNLVPGK  VNQLFSRYAR  GIGVNFSPVT  KHFRCPAEEV  FLPKRSFSLG  SPMMKRCTNH180
TPTICVVGGS  QGAQILNTCV  PQALVKLVNK  YPNMYVHHIV  GPKSDVMKVQ  HVYNRGEVLC240
CVKPFEEQLL  DVLLAADLVI  SRAGATILEE  ILWAKVPGIL  IPYPGAYGHQ  EVNAKFFVDV300
LEGGTMILEK  ELTEKLLVEK  VTFALDSHNR  EKQRNSLAAY  SQQRSTKTFH  AFICECL357

Predicted 3D structure by AlphaFold2 with pLDDT = 91.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT28(183-339)

MMKKIRKVAL  AVGGSGGHIV  PALSVKEAFS  REGIDVLLLG  KGLKNHPSLQ  QGISYREIPS60
GLPTVLNPIK  IMSRTLSLCS  GYLKARKELK  IFDPDLVIGF  GSYHSLPVLL  AGLSHKIPLF120
LHEQNLVPGK  VNQLFSRYAR  GIGVNFSPVT  KHFRCPAEEV  FLPKRSFSLG  SPMMKRCTNH180
TPTICVVGGS  QGAQILNTCV  PQALVKLVNK  YPNMYVHHIV  GPKSDVMKVQ  HVYNRGEVLC240
CVKPFEEQLL  DVLLAADLVI  SRAGATILEE  ILWAKVPGIL  IPYPGAYGHQ  EVNAKFFVDV300
LEGGTMILEK  ELTEKLLVEK  VTFALDSHNR  EKQRNSLAAY  SQQRSTKTFH  AFICECL357

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help