CAZyme3D

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Entry ID

Information for CAZyme ID: CEG61331.1

Basic Information

GenBank IDCEG61331.1
FamilyGH5
Sequence Length502
UniProt IDA0A098GIM4(100,100)Download
Average pLDDT?93.42
CAZy50 ID60866
CAZy50 RepNo, AHE67114.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID451
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLegionellales
FamilyLegionellaceae
GenusLegionella
SpeciesLegionella micdadei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKLIAMISF  IPALVFSATI  TNNITGVGPH  GSIKPYICIQ  RSDGTVTLRL  APGMTGDANQ60
ASGNQGYAGG  AIRFDGCTGD  NTYLGYIGFL  ISNNGNNSIN  EYKPPEGVHI  ALKNPAIDAS120
GNVTGSIEYT  PIADNPNLTQ  AKPGSNWPFA  GINLSGMEFG  KVIDPTVIPN  LSLTDSSTTN180
SDFKDTEEFI  KAGINTVRVP  ISWGFLQLDG  PGIGVLNEEY  YENYIAPLLR  SLTQAKVNTI240
VDLHAYMRYS  KFGEQISGCN  PAFTAHCPDG  TLITDEAAYK  SIWGQLAERM  LKDSKIDKNY300
LMLDLMNEPV  DVPDDKVFTI  QAALIKMLRE  QNYRGYILVE  GNNWTGLHSW  TTYQWTGSDG360
TPYTNATLFT  RDNFAKAGIT  DLSKVVINVH  QYLDSDYSGT  HDTCLQDLTT  TGSNGFNLNA420
FGDYLTTNQL  QAIVTEFGAG  RSSDSCRAPL  THFMQYLQDN  AAKDKGYGFV  GWTIWSTGHG480
WGNYNLRVLP  NSYQMDVLKQ  FL502

Predicted 3D structure by AlphaFold2 with pLDDT = 93.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(149-484)

MNKLIAMISF  IPALVFSATI  TNNITGVGPH  GSIKPYICIQ  RSDGTVTLRL  APGMTGDANQ60
ASGNQGYAGG  AIRFDGCTGD  NTYLGYIGFL  ISNNGNNSIN  EYKPPEGVHI  ALKNPAIDAS120
GNVTGSIEYT  PIADNPNLTQ  AKPGSNWPFA  GINLSGMEFG  KVIDPTVIPN  LSLTDSSTTN180
SDFKDTEEFI  KAGINTVRVP  ISWGFLQLDG  PGIGVLNEEY  YENYIAPLLR  SLTQAKVNTI240
VDLHAYMRYS  KFGEQISGCN  PAFTAHCPDG  TLITDEAAYK  SIWGQLAERM  LKDSKIDKNY300
LMLDLMNEPV  DVPDDKVFTI  QAALIKMLRE  QNYRGYILVE  GNNWTGLHSW  TTYQWTGSDG360
TPYTNATLFT  RDNFAKAGIT  DLSKVVINVH  QYLDSDYSGT  HDTCLQDLTT  TGSNGFNLNA420
FGDYLTTNQL  QAIVTEFGAG  RSSDSCRAPL  THFMQYLQDN  AAKDKGYGFV  GWTIWSTGHG480
WGNYNLRVLP  NSYQMDVLKQ  FL502

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help