CAZyme3D

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Entry ID

Information for CAZyme ID: CEA09274.1

Basic Information

GenBank IDCEA09274.1
FamilyGH32
Sequence Length309
UniProt IDA0A078MSN3(100,100)Download
Average pLDDT?91.49
CAZy50 ID106360
CAZy50 RepNo, SBT39462.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1461584
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter saudimassiliensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAFRLNDHWA  WDSWLADDGE  QYHLFFLRAS  RALQDPQRRH  YRASIGHAVS  ADLEDWSLLP60
DALVAADAPA  WDDLATWTGC  TVRGDDGRWH  LFYTGVGRAE  NGLQQRIGHA  VSDDLITWQR120
LDRPPLEADP  RWYEKLGEGT  WPDEAWRDPF  VFRDEDTGLW  HMLITARANE  GDPAGRAVVG180
HAVSTDMEEW  EVRPPLTSPA  GFGEMEVIQA  KVVDGQPVLI  FSCLPEFAPG  VDASRQPTGT240
WIAPGGSLLG  PWKLEETAEF  YLEGIYAAQL  VQKRDGEWVL  FGFQNGNFTG  EIAGPTPLKE300
LTGGRPLFG309

Predicted 3D structure by AlphaFold2 with pLDDT = 91.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(18-285)

MAFRLNDHWA  WDSWLADDGE  QYHLFFLRAS  RALQDPQRRH  YRASIGHAVS  ADLEDWSLLP60
DALVAADAPA  WDDLATWTGC  TVRGDDGRWH  LFYTGVGRAE  NGLQQRIGHA  VSDDLITWQR120
LDRPPLEADP  RWYEKLGEGT  WPDEAWRDPF  VFRDEDTGLW  HMLITARANE  GDPAGRAVVG180
HAVSTDMEEW  EVRPPLTSPA  GFGEMEVIQA  KVVDGQPVLI  FSCLPEFAPG  VDASRQPTGT240
WIAPGGSLLG  PWKLEETAEF  YLEGIYAAQL  VQKRDGEWVL  FGFQNGNFTG  EIAGPTPLKE300
LTGGRPLFG309

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help