CAZyme3D

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Entry ID

Information for CAZyme ID: CDX02122.1

Basic Information

GenBank IDCDX02122.1
FamilyGT35
Sequence Length811
UniProt IDA0A098B192(100,100)Download
Average pLDDT?93.81
CAZy50 ID22895
CAZy50 RepNo, QDR82152.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID49338
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyDesulfitobacteriaceae
GenusDesulfitobacterium
SpeciesDesulfitobacterium hafniense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSDKNGFKD  AYLEKFAEIK  GKSIEEGTLW  DKYHTLVVLL  REEISLSRAF  INYADPKNRP60
AKQVYYFSME  FLIGKLLHNY  LINIGIQDIV  AEGLEELNID  LQELLAQECD  AGLGNGGLGR120
LAACFLDSMA  FLGIAGHGNG  IRYKYGLFEQ  KIVNGYQTEV  ADHWLKNGYP  WEVRKPDKSV180
VIKYKGKVRV  ENINDRLVFH  HENYEPVLAV  PYDIPIVSYE  NPFLVNNLRL  WSAEPLSSEL240
DLALFNQGNF  TQALSNKSEV  EAISYILYPE  DSNLAGRELR  LKQEYFFVAA  GLATIVRNYK300
KNHGSLRDFS  QGVSIHINDT  HPALCIPELM  RILIDEEGMD  WEESWNITVD  AISYTNHTIM360
PEALEKWPLD  LFKNLLPRIT  MIIEEIDRRF  KEKLLRRFFN  SEELFRSTPI  IKEGQIYMAN420
LAMIGSHSVN  GVAKLHTEIL  KKHVFKDFHR  IFGYKFTNLT  NGVNHRRFLL  TANPLLSELI480
TEGIGPGWKT  NAGELAELHR  FKEDSAFLDR  LAQVKYQNKL  RLAEIIAKGQ  GIQVDPHSLY540
DVHVKRIHAY  KRQLLNVLKV  MDLYNRLLAD  PGSVQGTYTF  IFGGKAAPGY  HYAKSIIKLI600
HVIADKINQE  PRIKEQLKVV  FMENFNVSSA  ERIYPAADLS  EQISTAGKEA  SGTGNMKFMM660
NGALTIGTLD  GANVEIREAV  GEDHIFIFGL  TAEEILAHNL  NRTYRSWDEY  HANPRLENIL720
EQLISKQFME  NDWEFRTVYD  SLLLYNDEFY  VLKDFAAYMK  TFEEAADRYA  AQEQWLRSSL780
HNIAESGVFS  TDRTIREYAH  QVWRVRCRRM  D811

Predicted 3D structure by AlphaFold2 with pLDDT = 93.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(94-805)

MFSDKNGFKD  AYLEKFAEIK  GKSIEEGTLW  DKYHTLVVLL  REEISLSRAF  INYADPKNRP60
AKQVYYFSME  FLIGKLLHNY  LINIGIQDIV  AEGLEELNID  LQELLAQECD  AGLGNGGLGR120
LAACFLDSMA  FLGIAGHGNG  IRYKYGLFEQ  KIVNGYQTEV  ADHWLKNGYP  WEVRKPDKSV180
VIKYKGKVRV  ENINDRLVFH  HENYEPVLAV  PYDIPIVSYE  NPFLVNNLRL  WSAEPLSSEL240
DLALFNQGNF  TQALSNKSEV  EAISYILYPE  DSNLAGRELR  LKQEYFFVAA  GLATIVRNYK300
KNHGSLRDFS  QGVSIHINDT  HPALCIPELM  RILIDEEGMD  WEESWNITVD  AISYTNHTIM360
PEALEKWPLD  LFKNLLPRIT  MIIEEIDRRF  KEKLLRRFFN  SEELFRSTPI  IKEGQIYMAN420
LAMIGSHSVN  GVAKLHTEIL  KKHVFKDFHR  IFGYKFTNLT  NGVNHRRFLL  TANPLLSELI480
TEGIGPGWKT  NAGELAELHR  FKEDSAFLDR  LAQVKYQNKL  RLAEIIAKGQ  GIQVDPHSLY540
DVHVKRIHAY  KRQLLNVLKV  MDLYNRLLAD  PGSVQGTYTF  IFGGKAAPGY  HYAKSIIKLI600
HVIADKINQE  PRIKEQLKVV  FMENFNVSSA  ERIYPAADLS  EQISTAGKEA  SGTGNMKFMM660
NGALTIGTLD  GANVEIREAV  GEDHIFIFGL  TAEEILAHNL  NRTYRSWDEY  HANPRLENIL720
EQLISKQFME  NDWEFRTVYD  SLLLYNDEFY  VLKDFAAYMK  TFEEAADRYA  AQEQWLRSSL780
HNIAESGVFS  TDRTIREYAH  QVWRVRCRRM  D811

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help