CAZyme3D

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Entry ID

Information for CAZyme ID: CDS94603.1

Basic Information

GenBank IDCDS94603.1
FamilyGH130
Sequence Length492
UniProt IDA0A077XTC0(100,100)Download
Average pLDDT?89.80
CAZy50 ID49731
CAZy50 RepNo, AUP80405.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID403776
KingdomBacteria
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. PM2-P1-29

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYKPVQVNRK  DIYFRPDTKR  VLARFFSLGD  ERSVKVIHRV  LQLSDEKQKE  VFGQVLRSYS60
QRHRSIVKVF  ERNFDRVRHL  LERLDTPTDK  ISMTAKLLIG  SYFTMEYSIE  SAALFNPSIV120
EHPDQSELFK  GEKRVIISFR  ATGEGHVSSI  VFRSGYIDVE  NNIHLDVMGT  LLDKPINIKN180
HRYNKSSFIS  KLMELHPNGA  LAMEKLTQNL  TETFTYEELK  RYVEEIRAGI  EYTADNDGIL240
KQAIWLASSH  YEMTFSLDTA  ISERVIFPIS  DTEKRGIEDA  RFVRFITPKG  EVIYYATYTA300
YDGFSILPKL  LTTKDFYHFT  VKPIHGEIAN  KGAAIFPRKI  KGKYAMLCRI  DGENNYIAYS360
DYINIWNEAI  HLVQEPSSPY  EFIQIGNCGS  PIETTAGWLI  ITHAVGPMRE  YVIGASLLDL420
ENPHIEIGRL  SLPILTPNDM  EREGYVPNVV  YSCGAIVHND  QLIMPYAMSD  YASTYATINL480
NDLIQAILQP  EV492

Predicted 3D structure by AlphaFold2 with pLDDT = 89.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH130(245-486)

MYKPVQVNRK  DIYFRPDTKR  VLARFFSLGD  ERSVKVIHRV  LQLSDEKQKE  VFGQVLRSYS60
QRHRSIVKVF  ERNFDRVRHL  LERLDTPTDK  ISMTAKLLIG  SYFTMEYSIE  SAALFNPSIV120
EHPDQSELFK  GEKRVIISFR  ATGEGHVSSI  VFRSGYIDVE  NNIHLDVMGT  LLDKPINIKN180
HRYNKSSFIS  KLMELHPNGA  LAMEKLTQNL  TETFTYEELK  RYVEEIRAGI  EYTADNDGIL240
KQAIWLASSH  YEMTFSLDTA  ISERVIFPIS  DTEKRGIEDA  RFVRFITPKG  EVIYYATYTA300
YDGFSILPKL  LTTKDFYHFT  VKPIHGEIAN  KGAAIFPRKI  KGKYAMLCRI  DGENNYIAYS360
DYINIWNEAI  HLVQEPSSPY  EFIQIGNCGS  PIETTAGWLI  ITHAVGPMRE  YVIGASLLDL420
ENPHIEIGRL  SLPILTPNDM  EREGYVPNVV  YSCGAIVHND  QLIMPYAMSD  YASTYATINL480
NDLIQAILQP  EV492

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help