CAZyme3D

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Entry ID

Information for CAZyme ID: CDP28753.1

Basic Information

GenBank IDCDP28753.1
FamilyAA3_2
Sequence Length654
UniProt IDB2AQ72(100,100)Download
Average pLDDT?89.17
CAZy50 ID44053
CAZy50 RepNo, QBZ55222.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID515849
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderSordariales
FamilyPodosporaceae
GenusPodospora
SpeciesPodospora anserina

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARLSSLFVA  ILTLTPTAYS  RHLRASKVFL  DGRQVQNEYD  YVIIGGGTAG  LTVADRLTED60
GKTTVLVIEY  GVLTSLTTVA  GGFSGMSDSQ  FMYDIRSVPQ  VNLRNRVISV  LAGKVVGGSS120
AVNAMMTIRG  TAEDYDRWGA  FFGKNSHWTW  EGLLPYFKKA  LNFVPPNADI  TRTANITYDT180
SFWGNTSGVY  AGWPSYQFPA  TTAQMEAFKG  LPGVEIASDS  GSGVPGVYWY  PTFMDPKTVL240
RSFAKTGHYD  NVKRANYHLV  TQSKVTKIVL  DGTTATGVSF  VPAPARGQPG  NTAAPVTTVT300
ARKEVILAAG  GVHSPQVLQV  SGIGPKKVLS  SAGIDTIVDL  PGVGQNFQDH  GMISASFQFA360
RIPQSARPSS  DDLRTNRTLS  TWSSQIWAAN  RTGPNSIATG  NSAAWLSFPV  ISPRSAKLSA420
DLAAQNHAAY  LPTGSDPTVA  AGYRAQMLSY  ASALSNNNTA  FYNLVLQGGS  ASGLLVDLHP480
LSRGTVNVNP  ANPHNTEPQV  DYRALANPLD  ATIMGDIVRF  TRKYYLDNPK  TKDWGGREVS540
PGASVTTDEQ  LATFLSSSLS  PSVYHPAGTC  AMMPLELGGV  VDEELKVYGV  KNLRVVDASV600
IPTLPGANTC  QTVYAVAEKV  CVIQTKMVNS  RLTFITGGGP  HPIWRTKGLS  KRRQ654

Predicted 3D structure by AlphaFold2 with pLDDT = 89.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(38-621)

MARLSSLFVA  ILTLTPTAYS  RHLRASKVFL  DGRQVQNEYD  YVIIGGGTAG  LTVADRLTED60
GKTTVLVIEY  GVLTSLTTVA  GGFSGMSDSQ  FMYDIRSVPQ  VNLRNRVISV  LAGKVVGGSS120
AVNAMMTIRG  TAEDYDRWGA  FFGKNSHWTW  EGLLPYFKKA  LNFVPPNADI  TRTANITYDT180
SFWGNTSGVY  AGWPSYQFPA  TTAQMEAFKG  LPGVEIASDS  GSGVPGVYWY  PTFMDPKTVL240
RSFAKTGHYD  NVKRANYHLV  TQSKVTKIVL  DGTTATGVSF  VPAPARGQPG  NTAAPVTTVT300
ARKEVILAAG  GVHSPQVLQV  SGIGPKKVLS  SAGIDTIVDL  PGVGQNFQDH  GMISASFQFA360
RIPQSARPSS  DDLRTNRTLS  TWSSQIWAAN  RTGPNSIATG  NSAAWLSFPV  ISPRSAKLSA420
DLAAQNHAAY  LPTGSDPTVA  AGYRAQMLSY  ASALSNNNTA  FYNLVLQGGS  ASGLLVDLHP480
LSRGTVNVNP  ANPHNTEPQV  DYRALANPLD  ATIMGDIVRF  TRKYYLDNPK  TKDWGGREVS540
PGASVTTDEQ  LATFLSSSLS  PSVYHPAGTC  AMMPLELGGV  VDEELKVYGV  KNLRVVDASV600
IPTLPGANTC  QTVYAVAEKV  CVIQTKMVNS  RLTFITGGGP  HPIWRTKGLS  KRRQ654

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help