Information for CAZyme ID: CDG84174.1
Basic Information
| GenBank ID | CDG84174.1 |
| Family | GT83 |
| Sequence Length | 553 |
| UniProt ID | W0V5R7(100,100) |
| Average pLDDT? | 94.09 |
| CAZy50 ID | 51194 |
| CAZy50 Rep | No, QRX82210.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1349767 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Janthinobacterium |
| Species | Janthinobacterium agaricidamnosum |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MMSDLHKSRK LMWALLAVFV IVTLYALGVR TLVPPDEGRY AEMAREMFAS GDWVTTRLNG | 60 |
| IKYFEKPPLQ TWMNALSFMA FGLGDWQARL WTGVCGLIGV GMTVLAGNKL FGGRIALYAG | 120 |
| LVLGSSLFWI ASGQIDSLDM SLSAMMCITL CALLVAQRDE ATPAERRNWM LVCWAGMALA | 180 |
| VLAKGLIGLV LPGAVLVLYT LAARDWAIWA RLHLVKGLLL FFAICAPWFI LVALRNPEQP | 240 |
| HFFFIHEHFE RFLLKTHHRE GAWYYFFAML IPGIIPWLGL LPQSLAASLR RTQGVFQPRL | 300 |
| MLLIWAVFIF FFFSYSSSKL PGYILPIFPA LALLMALYLE SAPRAQRMFG AGLISVIGLA | 360 |
| GLAAVPYIVK ISTRHPAEVA MLQAYQPWVI AAAVVAAAGG LLALLQERKL RRDMMVLILA | 420 |
| GAGFIATHLI LAGFEPYGKL RAGTGLLPQL QAELLPDTKI YSISTYEQSL TFYLRRPVIL | 480 |
| VDYWDEFTFG LQQQPELSIP TIDAFVLQWT RDAAAGVRDV GIIEHGTYET LKKRGVPMRV | 540 |
| VAQDTRRMVI ANR | 553 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.09 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT83(7-543)
| MMSDLHKSRK LMWALLAVFV IVTLYALGVR TLVPPDEGRY AEMAREMFAS GDWVTTRLNG | 60 |
| IKYFEKPPLQ TWMNALSFMA FGLGDWQARL WTGVCGLIGV GMTVLAGNKL FGGRIALYAG | 120 |
| LVLGSSLFWI ASGQIDSLDM SLSAMMCITL CALLVAQRDE ATPAERRNWM LVCWAGMALA | 180 |
| VLAKGLIGLV LPGAVLVLYT LAARDWAIWA RLHLVKGLLL FFAICAPWFI LVALRNPEQP | 240 |
| HFFFIHEHFE RFLLKTHHRE GAWYYFFAML IPGIIPWLGL LPQSLAASLR RTQGVFQPRL | 300 |
| MLLIWAVFIF FFFSYSSSKL PGYILPIFPA LALLMALYLE SAPRAQRMFG AGLISVIGLA | 360 |
| GLAAVPYIVK ISTRHPAEVA MLQAYQPWVI AAAVVAAAGG LLALLQERKL RRDMMVLILA | 420 |
| GAGFIATHLI LAGFEPYGKL RAGTGLLPQL QAELLPDTKI YSISTYEQSL TFYLRRPVIL | 480 |
| VDYWDEFTFG LQQQPELSIP TIDAFVLQWT RDAAAGVRDV GIIEHGTYET LKKRGVPMRV | 540 |
| VAQDTRRMVI ANR | 553 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.