CAZyme3D

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Entry ID

Information for CAZyme ID: CDG44728.1

Basic Information

GenBank IDCDG44728.1
FamilyGT108
Sequence Length304
UniProt IDA0A3Q0NCT8(100,100)Download
Average pLDDT?96.36
CAZy50 ID138756
CAZy50 RepNo, AEV20975.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1334565
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyListeriaceae
GenusListeria
SpeciesListeria monocytogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNTIENLLQV  YRENSAAFGT  RITLNGAGDK  DVYNITAPFH  WLGQEYIAGR  VESRDSEFSE60
VRFFEKTETD  KYQLVENTTV  LALQDPFVTF  VQGELIIGGV  EVFPKETDPT  MLDWRTNLYR120
ATSLTDFEQI  LAGPIGMKDL  RIKELADGRI  LVLTRPQGEK  GGRGKIGAIV  MDSLTELTIE180
KIEAAPLLKR  NFSGEEWGGG  NEIHLLEDER  IGVLGHIACF  DEAGNRHYYA  CSFQLNEDFS240
QIEQEKIIAE  RANFAPSEPK  RPDLADVVFS  GGLIRNSDGT  ATLYAGIGDS  DAQKLAIPDP300
FKNN304

Predicted 3D structure by AlphaFold2 with pLDDT = 96.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT108(16-302)

MNTIENLLQV  YRENSAAFGT  RITLNGAGDK  DVYNITAPFH  WLGQEYIAGR  VESRDSEFSE60
VRFFEKTETD  KYQLVENTTV  LALQDPFVTF  VQGELIIGGV  EVFPKETDPT  MLDWRTNLYR120
ATSLTDFEQI  LAGPIGMKDL  RIKELADGRI  LVLTRPQGEK  GGRGKIGAIV  MDSLTELTIE180
KIEAAPLLKR  NFSGEEWGGG  NEIHLLEDER  IGVLGHIACF  DEAGNRHYYA  CSFQLNEDFS240
QIEQEKIIAE  RANFAPSEPK  RPDLADVVFS  GGLIRNSDGT  ATLYAGIGDS  DAQKLAIPDP300
FKNN304

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help