CAZyme3D

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Entry ID

Information for CAZyme ID: CCF82162.1

Basic Information

GenBank IDCCF82162.1
FamilyCBM11, GH26, GH5_25
Sequence Length900
UniProt IDH6SHY4(100,100)Download
Average pLDDT?86.08
CAZy50 ID19402
CAZy50 RepNo, AAA23225.1
Structure Cluster-
EC Number(s)3.2.1.4 | 3.2.1.8
Substrates(s)xylan | beta-glucan

Taxonomy

Tax ID1515
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusAcetivibrio
SpeciesAcetivibrio thermocellus
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/H6SHY4.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKRLLVSFL  VLSIIVGLLS  FQSLGNYNSG  LKIGAWVGTQ  PSESAIKSFQ  ELQGRKLDIV60
HQFINWSTDF  SWVRPYADAV  YNNGSILMIT  WEPWEYNTVD  IKNGKADAYI  TRMAQDMKAY120
GKEIWLRPLH  EANGDWYPWA  IGYSSRVNTN  ETYIAAFRHI  VDIFRANGAT  NVKWVFNVNC180
DNVGNGTSYL  GHYPGDNYVD  YTSIDGYNWG  TTQSWGSQWQ  SFDQVFSRAY  QALASINKPI240
IIAEFASAEI  GGNKARWITE  AYNSIRTSYN  KVIAAVWFHE  NKETDWRINS  SPEALAAYRE300
AIGAGSSNPT  PTPTWTSTPP  SSSPKAVDPF  EMVRKMGMGT  NLGNTLEAPY  EGSWSKSAME360
YYFDDFKAAG  YKNVRIPVRW  DNHTMRTYPY  TIDKAFLDRV  EQVVDWSLSR  GFVTIINSHH420
DDWIKEDYNG  NIERFEKIWE  QIAERFKNKS  ENLLFEIMNE  PFGNITDEQI  DDMNSRILKI480
IRKTNPTRIV  IIGGGYWNSY  NTLVNIKIPD  DPYLIGTFHY  YDPYEFTHKW  RGTWGTQEDM540
DTVVRVFDFV  KSWSDRNNIP  VYFGEFAVMA  YADRTSRVKW  YDFISDAALE  RGFACSVWDN600
GVFGSLDNDM  AIYNRDTRTF  DTEILNALFN  PGTYPSYSPK  PSPTPRPTKP  PVTPAVGEKM660
LDDFEGVLNW  GSYSGEGAKV  STKIVSGKTG  NGMEVSYTGT  TDGYWGTVYS  LPDGDWSKWL720
KISFDIKSVD  GSANEIRFMI  AEKSINGVGD  GEHWVYSITP  DSSWKTIEIP  FSSFRRRLDY780
QPPGQDMSGT  LDLDNIDSIH  FMYANNKSGK  FVVDNIKLIG  ATSDPTPSIK  HGDLNFDNAV840
NSTDLLMLKR  YILKSLELGT  SEQEEKFKKA  ADLNRDNKVD  STDLTILKRY  LLKAISEIPI900
900

Predicted 3D structure by AlphaFold2 with pLDDT = 86.08 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH26(103-273)+GH5_25(352-599)+CBM11(661-820)+dockerin(833-853)+dockerin(872-892)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help