CAZyme3D

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Entry ID

Information for CAZyme ID: CCA60030.1

Basic Information

GenBank IDCCA60030.1
FamilyCBM13, GH62
Sequence Length491
UniProt IDF2RHT6(100,100)Download
Average pLDDT?91.58
CAZy50 ID22371
CAZy50 RepNo, CCK27711.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID953739
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces venezuelae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFRRPPLVL  SLVLAVLSSL  LLGASLLSAP  PAAAATVDTN  AWYVLVNRNS  GKALDVHNLA60
TGDGARITQW  TRNDQNQQQW  QFVASGDGYY  RLKSRHSGKV  LDVQNSSTAN  GGAIVQWTDA120
NGTNQQWRLA  DSADGHIRLV  ARHSGKALEV  QGGSTADNAN  IVQYDDWGGA  NQQWQLVKVG180
GGTPGTCALP  STYRWSSTGA  LAQPKAGWAS  LKDFTVAPHN  GKHLVYATTH  GTTASGVGWG240
SMNFTPFTDW  SQMASTGQNT  MANRVVAPTL  FYFAPKNIWV  LAYQWGRTAF  SYRTSTDPAN300
PNGWSAEQEL  FSGSITGSGT  GPIDQTLIGD  GTNMYLFFAG  DNGKIYRASM  PIGNFPGSFG360
SSYTTIMSDT  EKNLFEAPQV  YKVKDQNQYL  MIVEARGASE  HRYFRSFTAT  SLSGSWTPQA420
ATESNPFAGK  ANSGAIWTND  ISHGELIRAG  ADQTFTIDPC  NLQFLYQGRD  PNSGGDYGQW480
AYRPGLLTLQ  R491

Predicted 3D structure by AlphaFold2 with pLDDT = 91.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM13(43-178)+GH62(187-461)

MRFRRPPLVL  SLVLAVLSSL  LLGASLLSAP  PAAAATVDTN  AWYVLVNRNS  GKALDVHNLA60
TGDGARITQW  TRNDQNQQQW  QFVASGDGYY  RLKSRHSGKV  LDVQNSSTAN  GGAIVQWTDA120
NGTNQQWRLA  DSADGHIRLV  ARHSGKALEV  QGGSTADNAN  IVQYDDWGGA  NQQWQLVKVG180
GGTPGTCALP  STYRWSSTGA  LAQPKAGWAS  LKDFTVAPHN  GKHLVYATTH  GTTASGVGWG240
SMNFTPFTDW  SQMASTGQNT  MANRVVAPTL  FYFAPKNIWV  LAYQWGRTAF  SYRTSTDPAN300
PNGWSAEQEL  FSGSITGSGT  GPIDQTLIGD  GTNMYLFFAG  DNGKIYRASM  PIGNFPGSFG360
SSYTTIMSDT  EKNLFEAPQV  YKVKDQNQYL  MIVEARGASE  HRYFRSFTAT  SLSGSWTPQA420
ATESNPFAGK  ANSGAIWTND  ISHGELIRAG  ADQTFTIDPC  NLQFLYQGRD  PNSGGDYGQW480
AYRPGLLTLQ  R491

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help