CAZyme3D

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Entry ID

Information for CAZyme ID: CBX97511.1

Basic Information

GenBank IDCBX97511.1
FamilyGH47
Sequence Length593
UniProt IDE5A155(100,100)Download
Average pLDDT?94.40
CAZy50 ID50602
CAZy50 RepNo, QDS74916.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID985895
KingdomEukaryota
PhylumAscomycota
ClassDothideomycetes
OrderPleosporales
FamilyLeptosphaeriaceae
GenusPlenodomus
SpeciesPlenodomus lingam

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGPPLRRIVV  LCVSATLLLL  AFRQLGARDE  FPSPTFTSSS  KIEHSIQWNQ  LSIRYPVPSM60
IALPKGTPLS  IPKIQHEFGI  ETEHNKAQRL  RRRAAVKDAF  LHTWEGYKKY  AWLQDEVTPV120
TGGFKNSFGQ  RGASLVDALD  TLVIMGLEKE  FEHAVRAMKK  IDFTTAGLQK  LNVFETTIRY180
LGGLLSAYDL  SGAKHHVLLD  RATQLGDMLY  AAFDTPNRMP  ITRWDWENAA  LNGPQSADSQ240
CLSAELGSLT  LEFTRLSQLT  GNPKYYDAVQ  RISDLLEKHQ  NNTKLPGLFP  VLVSPLREEF300
NTGETFTMGG  MTDSLYEYFP  KQYLLLGGHA  DQYRRLYEAA  MEPAKKHLFF  RPLNPNDQEI360
LVAGDARLSS  AGTVKLEPDT  QHLSCFAGGM  LALGSKLFNR  TEDMEVARKL  VDGCVWAYDA420
MPTGIMPETF  RAVPCNGEED  CKWNAEKWHA  AVKYSYSSDY  NALRLDVHDI  IKADGLQSGF480
AKIGDPRFLL  RPEAIESVFV  LYRITGDYSL  QDTAWRMFDA  INTATKAEFA  HSAIADVTVP540
KGQETRKLDE  CESFWMAETL  KYFYLVFSEP  ELVSLDDYVF  NTEAHPFRRP  RAS593

Predicted 3D structure by AlphaFold2 with pLDDT = 94.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH47(99-589)

MGPPLRRIVV  LCVSATLLLL  AFRQLGARDE  FPSPTFTSSS  KIEHSIQWNQ  LSIRYPVPSM60
IALPKGTPLS  IPKIQHEFGI  ETEHNKAQRL  RRRAAVKDAF  LHTWEGYKKY  AWLQDEVTPV120
TGGFKNSFGQ  RGASLVDALD  TLVIMGLEKE  FEHAVRAMKK  IDFTTAGLQK  LNVFETTIRY180
LGGLLSAYDL  SGAKHHVLLD  RATQLGDMLY  AAFDTPNRMP  ITRWDWENAA  LNGPQSADSQ240
CLSAELGSLT  LEFTRLSQLT  GNPKYYDAVQ  RISDLLEKHQ  NNTKLPGLFP  VLVSPLREEF300
NTGETFTMGG  MTDSLYEYFP  KQYLLLGGHA  DQYRRLYEAA  MEPAKKHLFF  RPLNPNDQEI360
LVAGDARLSS  AGTVKLEPDT  QHLSCFAGGM  LALGSKLFNR  TEDMEVARKL  VDGCVWAYDA420
MPTGIMPETF  RAVPCNGEED  CKWNAEKWHA  AVKYSYSSDY  NALRLDVHDI  IKADGLQSGF480
AKIGDPRFLL  RPEAIESVFV  LYRITGDYSL  QDTAWRMFDA  INTATKAEFA  HSAIADVTVP540
KGQETRKLDE  CESFWMAETL  KYFYLVFSEP  ELVSLDDYVF  NTEAHPFRRP  RAS593

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help