CAZyme3D

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Entry ID

Information for CAZyme ID: CBL47155.1

Basic Information

GenBank IDCBL47155.1
FamilyGH23
Sequence Length225
UniProt IDE1VQR3(100,100)Download
Average pLDDT?79.67
CAZy50 ID153522
CAZy50 RepNo, AYO53615.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID83406
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
Order
Family
Genus
Speciesgamma proteobacterium HdN1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MISFRVFTIT  TLALTLANTV  LASTAFAGNV  YQFRDRDGRV  LFTNVVTANR  TPSDPRFREY60
RTLEKVTWFK  DTNVHTYRNW  GSSEYDLLPS  FSKNRNAFDD  LILNASLQSG  VDRALIKAVI120
HTESGFNPKA  RSAPGAQGLM  QLMPATAARY  NVRDAYDPQD  NIRAGTRHLR  YLLERYDQNL180
ELALAAYNAG  EKNVEKYNGI  PPFAETQDYV  RRVVSRYKHL  YHGNS225

Predicted 3D structure by AlphaFold2 with pLDDT = 79.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(113-221)

MISFRVFTIT  TLALTLANTV  LASTAFAGNV  YQFRDRDGRV  LFTNVVTANR  TPSDPRFREY60
RTLEKVTWFK  DTNVHTYRNW  GSSEYDLLPS  FSKNRNAFDD  LILNASLQSG  VDRALIKAVI120
HTESGFNPKA  RSAPGAQGLM  QLMPATAARY  NVRDAYDPQD  NIRAGTRHLR  YLLERYDQNL180
ELALAAYNAG  EKNVEKYNGI  PPFAETQDYV  RRVVSRYKHL  YHGNS225

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help