CAZyme3D

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Entry ID

Information for CAZyme ID: CBK68223.1

Basic Information

GenBank IDCBK68223.1
FamilyCE12
Sequence Length412
UniProt IDD6D1C1(100,100)Download
Average pLDDT?94.09
CAZy50 ID5587
CAZy50 RepNo, ADY37533.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID657309
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides xylanisolvens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTTIIGLLL  LATITVHAQE  EVRTYQLSDA  PRYSEETGYG  YDLTATPEKG  SKSPFFFSVR60
VPDGNYKVTV  RLGSKKHAGV  TTVRGESRRL  FVENLPTKKG  QFVDETFIIN  KRTPRISEKE120
YVRIKPREKA  KLNWDDKLTL  EFNGDAPVCQ  SIRIEPADPS  VITVFLCGNS  TVVDQDNEPW180
ASWGQMIPHF  FGTDVCIANY  AESGESANTF  IGAGRLKKAL  SQMKKGDYLF  MEFGHNDQKQ240
KGPGKGAYYS  FMTSLKTFID  EARARGAYPI  LVTPTQRRSF  DSTGHIRDTH  EDYPEAMRWL300
AAKENIPLID  LNEMTRTLYE  ALGTETSKRA  FVHYPAGTYP  GQTKAFEDNT  HFNPYGAYQI360
AQCVIEGMKK  AVPELAKHLK  IDPAYNPAHP  DDVNTFHWNE  SPFTEIEKPD  GN412

Predicted 3D structure by AlphaFold2 with pLDDT = 94.09 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(163-367)

MKTTIIGLLL  LATITVHAQE  EVRTYQLSDA  PRYSEETGYG  YDLTATPEKG  SKSPFFFSVR60
VPDGNYKVTV  RLGSKKHAGV  TTVRGESRRL  FVENLPTKKG  QFVDETFIIN  KRTPRISEKE120
YVRIKPREKA  KLNWDDKLTL  EFNGDAPVCQ  SIRIEPADPS  VITVFLCGNS  TVVDQDNEPW180
ASWGQMIPHF  FGTDVCIANY  AESGESANTF  IGAGRLKKAL  SQMKKGDYLF  MEFGHNDQKQ240
KGPGKGAYYS  FMTSLKTFID  EARARGAYPI  LVTPTQRRSF  DSTGHIRDTH  EDYPEAMRWL300
AAKENIPLID  LNEMTRTLYE  ALGTETSKRA  FVHYPAGTYP  GQTKAFEDNT  HFNPYGAYQI360
AQCVIEGMKK  AVPELAKHLK  IDPAYNPAHP  DDVNTFHWNE  SPFTEIEKPD  GN412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help