CAZyme3D

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Entry ID

Information for CAZyme ID: CBK67687.1

Basic Information

GenBank IDCBK67687.1
FamilyGH2
Sequence Length574
UniProt IDD6CZT5(100,100)Download
Average pLDDT?96.27
CAZy50 ID2581
CAZy50 RepNo, QGJ70829.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID657309
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides xylanisolvens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTEWAAKIDV  ENVLPEYPRP  IMERADWINL  NGLWNYAISP  VGQAMPQSYD  GRILVPFAVE60
SSLSGVGKSL  GEKNELWYQR  QFSVPSKWKG  HRILLHFGAV  DWKADVWVNK  VKVGQHTGGF120
TPFSFDITPA  LLNGENELIV  KVWDPTDKGP  QPRGKQVSKP  GGIWYTPVSG  IWQTVWLEPV180
PIRSIVNIKT  TPDIDRNKLT  VEVMTDHQML  SDKLEVKVLE  GKQLVAVGSS  VNGIPVEIAM240
PSDVKWWSPD  SPFLYDMEIC  LYSENKLIDK  VKSYTAMRKY  STKRDKNGIV  RLQLNNKDLF300
QFGLLDQGWW  PDGLYTAPSD  EALVYDIQKT  KDFGYNMIRK  HIKVEPARWY  TYCDRLGVIV360
WQDMPSGDKN  PEWQNRKYFE  GTEFKRSAES  EAIYRKEWKE  IIDCLYSYPC  IGTWVPFNEA420
WGQFKTPEIA  EWTKQYDPSR  LVNPASGGNH  YTCGDMLDLH  NYPGPEMYLY  DAQRATVLGE480
YGGIGLVLKE  HLWEPNRNWG  YVQFSTSKEA  TDEYLKYANM  LKDMIARGFS  AAVYTQTTDV540
EIEVNGLMTY  DRKVIKLDEQ  NLKRVNTEIC  ESLK574

Predicted 3D structure by AlphaFold2 with pLDDT = 96.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(22-467)

MTEWAAKIDV  ENVLPEYPRP  IMERADWINL  NGLWNYAISP  VGQAMPQSYD  GRILVPFAVE60
SSLSGVGKSL  GEKNELWYQR  QFSVPSKWKG  HRILLHFGAV  DWKADVWVNK  VKVGQHTGGF120
TPFSFDITPA  LLNGENELIV  KVWDPTDKGP  QPRGKQVSKP  GGIWYTPVSG  IWQTVWLEPV180
PIRSIVNIKT  TPDIDRNKLT  VEVMTDHQML  SDKLEVKVLE  GKQLVAVGSS  VNGIPVEIAM240
PSDVKWWSPD  SPFLYDMEIC  LYSENKLIDK  VKSYTAMRKY  STKRDKNGIV  RLQLNNKDLF300
QFGLLDQGWW  PDGLYTAPSD  EALVYDIQKT  KDFGYNMIRK  HIKVEPARWY  TYCDRLGVIV360
WQDMPSGDKN  PEWQNRKYFE  GTEFKRSAES  EAIYRKEWKE  IIDCLYSYPC  IGTWVPFNEA420
WGQFKTPEIA  EWTKQYDPSR  LVNPASGGNH  YTCGDMLDLH  NYPGPEMYLY  DAQRATVLGE480
YGGIGLVLKE  HLWEPNRNWG  YVQFSTSKEA  TDEYLKYANM  LKDMIARGFS  AAVYTQTTDV540
EIEVNGLMTY  DRKVIKLDEQ  NLKRVNTEIC  ESLK574

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help