CAZyme3D

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Entry ID

Information for CAZyme ID: CBK67191.1

Basic Information

GenBank IDCBK67191.1
FamilyGH5_5
Sequence Length361
UniProt IDD6CYD9(100,100)Download
Average pLDDT?91.86
CAZy50 ID5235
CAZy50 RepNo, AGA76691.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID657309
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides xylanisolvens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLKDLFSLLT  IIALLFSSCS  KSDEEENGDE  PQPTKQTAYF  GVNLSGAEFG  NVYPGVDGTH60
YGYPTEKDLD  YFKAKGLYLV  RFPFRWERIQ  PTMNGELNAT  ELAKMKKFVK  AAEDRNIQIL120
LDMHNFGRYC  VYCDGQSSQN  NQYAIIGNAR  CTVDNFCDVW  KKLAKEFKDY  KNIWGYDIMN180
EPYEMLASTP  WVNIAQACIN  AIRTIDTKTT  IIVSGDEFSS  ARRWKECSDN  LKTLTDPSNN240
LIFQAHIYFD  SDSSGNYNKG  YDEDGATVQT  GVARLKPFVD  WLKENNKRGF  VGEYGIPDTD300
GRWLDILDAA  LKYLQENGIN  GTYWSAGPRW  GDYPLSVQPT  NNYTQDRPQL  STLLKYKSTQ360
Q361

Predicted 3D structure by AlphaFold2 with pLDDT = 91.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(39-333)

MLKDLFSLLT  IIALLFSSCS  KSDEEENGDE  PQPTKQTAYF  GVNLSGAEFG  NVYPGVDGTH60
YGYPTEKDLD  YFKAKGLYLV  RFPFRWERIQ  PTMNGELNAT  ELAKMKKFVK  AAEDRNIQIL120
LDMHNFGRYC  VYCDGQSSQN  NQYAIIGNAR  CTVDNFCDVW  KKLAKEFKDY  KNIWGYDIMN180
EPYEMLASTP  WVNIAQACIN  AIRTIDTKTT  IIVSGDEFSS  ARRWKECSDN  LKTLTDPSNN240
LIFQAHIYFD  SDSSGNYNKG  YDEDGATVQT  GVARLKPFVD  WLKENNKRGF  VGEYGIPDTD300
GRWLDILDAA  LKYLQENGIN  GTYWSAGPRW  GDYPLSVQPT  NNYTQDRPQL  STLLKYKSTQ360
Q361

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help