CAZyme3D

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Entry ID

Information for CAZyme ID: CBG74865.1

Basic Information

GenBank IDCBG74865.1
FamilyCE2
Sequence Length378
UniProt IDC9ZE74(100,100)Download
Average pLDDT?90.57
CAZy50 ID50341
CAZy50 RepNo, UJP40830.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID680198
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces scabiei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTPRHMSRR  TLVAAGAAGL  AATVVSPASA  TVRTAGTGSP  SAGFHTVGRV  ERTADGSVRY60
SWPGISFEGR  FRGTGVGVVL  DDADNDYDVQ  VDGETVATLV  TPGRTVSWIH  GLADTRHRVR120
VVKRTESPWA  AGRFGGFVAA  SGGAILARPR  ARERQIEFIG  DSYTAGYGNM  STTQDCSGNG180
GVNRNSNADL  SFGALTARKL  DADVQINAFS  GRGMVRNYNG  GEPGTDFRTF  YDRALLNVEG240
DVWRKPESWR  PRVVVIGLGI  NDFSTPLNPG  ERWSTTADLV  AAYESAYHGF  LDKLRTRYGR300
GTFLVVAAAR  IWNTTVFEEA  TRRIVEERRR  RGDRRTSHWY  YDDPGLDHLG  CDWHPSLNDH360
RIVSGLLDGH  LAGLPLRW378

Predicted 3D structure by AlphaFold2 with pLDDT = 90.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(155-366)

MRTPRHMSRR  TLVAAGAAGL  AATVVSPASA  TVRTAGTGSP  SAGFHTVGRV  ERTADGSVRY60
SWPGISFEGR  FRGTGVGVVL  DDADNDYDVQ  VDGETVATLV  TPGRTVSWIH  GLADTRHRVR120
VVKRTESPWA  AGRFGGFVAA  SGGAILARPR  ARERQIEFIG  DSYTAGYGNM  STTQDCSGNG180
GVNRNSNADL  SFGALTARKL  DADVQINAFS  GRGMVRNYNG  GEPGTDFRTF  YDRALLNVEG240
DVWRKPESWR  PRVVVIGLGI  NDFSTPLNPG  ERWSTTADLV  AAYESAYHGF  LDKLRTRYGR300
GTFLVVAAAR  IWNTTVFEEA  TRRIVEERRR  RGDRRTSHWY  YDDPGLDHLG  CDWHPSLNDH360
RIVSGLLDGH  LAGLPLRW378

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help