CAZyme3D

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Entry ID

Information for CAZyme ID: CBA17261.1

Basic Information

GenBank IDCBA17261.1
FamilyCBM35, GH98
Sequence Length787
UniProt IDD2UFV0(100,100)Download
Average pLDDT?89.02
CAZy50 ID9437
CAZy50 RepNo, AXY74108.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID380358
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusXanthomonas
SpeciesXanthomonas albilineans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKMPRELHKC  ALPCALLSML  LSACGGDEDA  HSAANTSPQI  ASATPTVWSA  TTRTPTTATV60
PRQVVSQTDN  STTLRRPLSP  SQPMFLIHAD  SWNAADAQKI  IDLIPADLRP  YTVLLISLSI120
YHKGATGNQC  NWLQVEDGIE  TARSWIKTAA  ANGVWAMIQP  SSGGFSHFPD  YPPDTDLEST180
VYGEFFRDYP  NFIGFNYAEQ  FWGFDQPCSG  SAIQRWEHWA  NLLKLTNKYG  GYLAVSFTGG240
FWGANINPLA  MVKRDQILRN  ALSNYAQNFI  IEEKFTTDYG  YHDIESVSLG  MFLSGFAGHY300
GIRPDRSGWY  DSKGDDSDNY  PVQAGSPHLI  EHLTFTGETM  FDGPEQIRLD  AVHNLPNATT360
ADGYTTRRWE  FYPHYRNIQL  DIYRKILDGT  LRILSRQEVI  DRSKVVIVND  TASGDDRNLY420
SSPESLFTGL  YLLDDDGTYL  NQHSWYKKTG  RYPAIPTVFQ  LTDDTAKSFK  VQIPKTTYAT480
RWPTINDKLN  ELNALFPQEY  TGTLYAGRQD  NTWVTYNPFK  TNQSASGTIP  LKYNSCATLN540
LTYGPYTSGV  IKEFPQTLSI  YLTNFDSPNG  ALKTDTIDIE  GATTAPTFTF  ADRGDHQASI600
VTSTTTTNGL  TLNVAHNGPL  DITVQCTGTA  NAGQTSPQIV  PLQPPDAPPA  YTGVLQYEAE660
NFDFRNIRNL  VVYGVSGPIR  NYQALGYVDF  GTNPAASIRT  DVNVPSAGTY  QLQTRYSTTG720
ASIGTVDLYI  NGVKVGTPTF  AQTTSASDWA  TLQQPVTLNA  GSNRVEFRAN  AAAPAALYLD780
NIRLSSQ787

Predicted 3D structure by AlphaFold2 with pLDDT = 89.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH98(73-391)+CBM35(679-783)

MKMPRELHKC  ALPCALLSML  LSACGGDEDA  HSAANTSPQI  ASATPTVWSA  TTRTPTTATV60
PRQVVSQTDN  STTLRRPLSP  SQPMFLIHAD  SWNAADAQKI  IDLIPADLRP  YTVLLISLSI120
YHKGATGNQC  NWLQVEDGIE  TARSWIKTAA  ANGVWAMIQP  SSGGFSHFPD  YPPDTDLEST180
VYGEFFRDYP  NFIGFNYAEQ  FWGFDQPCSG  SAIQRWEHWA  NLLKLTNKYG  GYLAVSFTGG240
FWGANINPLA  MVKRDQILRN  ALSNYAQNFI  IEEKFTTDYG  YHDIESVSLG  MFLSGFAGHY300
GIRPDRSGWY  DSKGDDSDNY  PVQAGSPHLI  EHLTFTGETM  FDGPEQIRLD  AVHNLPNATT360
ADGYTTRRWE  FYPHYRNIQL  DIYRKILDGT  LRILSRQEVI  DRSKVVIVND  TASGDDRNLY420
SSPESLFTGL  YLLDDDGTYL  NQHSWYKKTG  RYPAIPTVFQ  LTDDTAKSFK  VQIPKTTYAT480
RWPTINDKLN  ELNALFPQEY  TGTLYAGRQD  NTWVTYNPFK  TNQSASGTIP  LKYNSCATLN540
LTYGPYTSGV  IKEFPQTLSI  YLTNFDSPNG  ALKTDTIDIE  GATTAPTFTF  ADRGDHQASI600
VTSTTTTNGL  TLNVAHNGPL  DITVQCTGTA  NAGQTSPQIV  PLQPPDAPPA  YTGVLQYEAE660
NFDFRNIRNL  VVYGVSGPIR  NYQALGYVDF  GTNPAASIRT  DVNVPSAGTY  QLQTRYSTTG720
ASIGTVDLYI  NGVKVGTPTF  AQTTSASDWA  TLQQPVTLNA  GSNRVEFRAN  AAAPAALYLD780
NIRLSSQ787

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help