CAZyme3D

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Entry ID

Information for CAZyme ID: CAY75380.1

Basic Information

GenBank IDCAY75380.1
FamilyCBM50, GH23
Sequence Length497
UniProt IDD2T5E9(100,100)Download
Average pLDDT?73.36
CAZy50 ID68708
CAZy50 RepNo, QKJ85951.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID644651
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusErwinia
SpeciesErwinia pyrifoliae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSDFCDSTRE  ERQFLRFQVV  LSGSTTYYCS  SFKRTIDTYM  KAKAILLASV  LLAGCQASRH60
DANIPEQHAQ  SLSSASENGQ  YTDNMLSPRW  QDDGTSLAQD  KDLWNFISDE  LKMKVPDNYR120
IREQKQKYLS  NKSYLHDVTL  RAEPYMYWIV  EQIKQRKMPM  ELVLLPIVES  AFNPHATSSA180
NAAGIWQIVP  QTGRNYGLKQ  TQWYDGRRDI  VASTKVALDM  MQRLNDMFDG  DWLLSVAAYN240
SGEGRVLKAI  RTNKAKGRPT  DFWSLALPKE  TTVYVPKMLA  LGQILKNSKR  YGVSLPTPNK300
TRALARVEVG  QQIELTQAAE  MAGMSLSKLK  SFNTGYRRGT  TAPNGPHYIM  VPKSNVAKLR360
DSLATGDIAA  VQTTSLANNS  VSPASYKVRS  GDTLSGIAKR  LGVPVKDLQR  TNNLRGSSIK420
PGQTLTLGNN  VGAQLVDNGD  SITYQVRKGD  SLASIAKRHG  VNIKDVMRWN  SGSTSAKNIR480
PGDKLTLFVA  DNATPDS497

Predicted 3D structure by AlphaFold2 with pLDDT = 73.36 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(145-287)+CBM50(386-427)+CBM50(444-487)

MSDFCDSTRE  ERQFLRFQVV  LSGSTTYYCS  SFKRTIDTYM  KAKAILLASV  LLAGCQASRH60
DANIPEQHAQ  SLSSASENGQ  YTDNMLSPRW  QDDGTSLAQD  KDLWNFISDE  LKMKVPDNYR120
IREQKQKYLS  NKSYLHDVTL  RAEPYMYWIV  EQIKQRKMPM  ELVLLPIVES  AFNPHATSSA180
NAAGIWQIVP  QTGRNYGLKQ  TQWYDGRRDI  VASTKVALDM  MQRLNDMFDG  DWLLSVAAYN240
SGEGRVLKAI  RTNKAKGRPT  DFWSLALPKE  TTVYVPKMLA  LGQILKNSKR  YGVSLPTPNK300
TRALARVEVG  QQIELTQAAE  MAGMSLSKLK  SFNTGYRRGT  TAPNGPHYIM  VPKSNVAKLR360
DSLATGDIAA  VQTTSLANNS  VSPASYKVRS  GDTLSGIAKR  LGVPVKDLQR  TNNLRGSSIK420
PGQTLTLGNN  VGAQLVDNGD  SITYQVRKGD  SLASIAKRHG  VNIKDVMRWN  SGSTSAKNIR480
PGDKLTLFVA  DNATPDS497

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help