CAZyme3D

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Entry ID

Information for CAZyme ID: CAR82361.1

Basic Information

GenBank IDCAR82361.1
FamilyCBM32, CBM40, GH33
Sequence Length772
UniProt IDE1UGY4(100,100)Download
Average pLDDT?88.93
CAZy50 ID6159
CAZy50 RepNo, ATD57534.1
Structure Cluster-
EC Number(s)3.2.1.18
Substrates(s)sialic acid

Taxonomy

Tax ID46867
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium chauvoei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MCKKKIMAII  MSSLFIANLS  NTIIYADIND  RAYINQYEQQ  RGSKPISEKL  VPKSEITATA60
TSSQPGEGAD  KAIDNNTSTL  WHTPWGGVDI  GSNPQSLTLN  LGKTRNISSI  HVTPRQQGNN120
GMIKEYKIYA  GDKVMAEGTW  KTDASTKYVI  FNEPVSTDNI  RIEAISTAGD  TNNKYASIAE180
VEVYEASNSE  IVKLVEASNK  VINSGNGGSY  EGNIDEVKTL  EEGTAIIRFI  NKGSGIQSLF240
SISNNTRANE  HFHVYLNGGT  IGYELRKQSG  NLSTGTVNKA  LNAGINTLAF  RAEKNTGYSI300
YLNGEKILDK  AVTSATFLST  LEGLNTLSLG  KTDRASGSNE  YNFTGEIDFF  ELYSQPLADR360
YLKEITGETT  AKELPLPEGV  LKTEPIDLFA  PGELDSNNFR  IPALYTTKNG  NVLASIDVRK420
GGGHDSPNNI  DTGIKRSIDG  GVTWDEGKVI  LDYPGASSAI  DTSMIQDEET  GRIFLLVTHF480
AEGYGFPNST  TGSGYVEIEG  QRYLKLLGAN  NSIYTVRENG  IVYDSNGEAT  NYKVDEQNEL540
YENETRVGNI  LLSNSPLKVM  GTSFLSLIYS  DDEGETWSDP  IDLNKQVKSD  WMRFLGTGPG600
RGHQIKTGNY  AGRLVFPVYL  TNSSGFQSST  VIYSDDNGAT  WNMGETATDG  RLMSNGEKAN660
AETITTSTSG  GVGQLTECQV  VEMPNGQLKM  FMRNTGGNSS  YVRIATSFDG  GATWDDDVVR720
DENIREPYCQ  LSVINYSQKI  DGKDALIFAN  PDAGNRSNGT  VRIGLITENG  NL772

Predicted 3D structure by AlphaFold2 with pLDDT = 88.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM32(58-182)+CBM40(199-370)+GH33(387-765)

MCKKKIMAII  MSSLFIANLS  NTIIYADIND  RAYINQYEQQ  RGSKPISEKL  VPKSEITATA60
TSSQPGEGAD  KAIDNNTSTL  WHTPWGGVDI  GSNPQSLTLN  LGKTRNISSI  HVTPRQQGNN120
GMIKEYKIYA  GDKVMAEGTW  KTDASTKYVI  FNEPVSTDNI  RIEAISTAGD  TNNKYASIAE180
VEVYEASNSE  IVKLVEASNK  VINSGNGGSY  EGNIDEVKTL  EEGTAIIRFI  NKGSGIQSLF240
SISNNTRANE  HFHVYLNGGT  IGYELRKQSG  NLSTGTVNKA  LNAGINTLAF  RAEKNTGYSI300
YLNGEKILDK  AVTSATFLST  LEGLNTLSLG  KTDRASGSNE  YNFTGEIDFF  ELYSQPLADR360
YLKEITGETT  AKELPLPEGV  LKTEPIDLFA  PGELDSNNFR  IPALYTTKNG  NVLASIDVRK420
GGGHDSPNNI  DTGIKRSIDG  GVTWDEGKVI  LDYPGASSAI  DTSMIQDEET  GRIFLLVTHF480
AEGYGFPNST  TGSGYVEIEG  QRYLKLLGAN  NSIYTVRENG  IVYDSNGEAT  NYKVDEQNEL540
YENETRVGNI  LLSNSPLKVM  GTSFLSLIYS  DDEGETWSDP  IDLNKQVKSD  WMRFLGTGPG600
RGHQIKTGNY  AGRLVFPVYL  TNSSGFQSST  VIYSDDNGAT  WNMGETATDG  RLMSNGEKAN660
AETITTSTSG  GVGQLTECQV  VEMPNGQLKM  FMRNTGGNSS  YVRIATSFDG  GATWDDDVVR720
DENIREPYCQ  LSVINYSQKI  DGKDALIFAN  PDAGNRSNGT  VRIGLITENG  NL772

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help